Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72220 159 / 2e-45 RING/U-box superfamily protein (.1) AT4G33565 138 / 1e-37 RING/U-box superfamily protein (.1) AT5G10380 135 / 3e-37 ATRING1, RING1 RING/U-box superfamily protein (.1) AT5G17600 119 / 9e-31 RING/U-box superfamily protein (.1) AT3G03550 116 / 1e-29 RING/U-box superfamily protein (.1) AT4G17905 102 / 6e-25 ATL4H RING/U-box superfamily protein (.1) AT1G23980 94 / 3e-21 RING/U-box superfamily protein (.1) AT2G18650 93 / 6e-21 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT1G72200 93 / 7e-21 RING/U-box superfamily protein (.1) AT2G20030 91 / 4e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009264 [exp] 210 / 1e-67 AT3G03550 77 / 4e-17 RING/U-box superfamily protein (.1) Lus10012745 [exp] 144 / 2e-40 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10037264 [exp] 118 / 3e-30 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 115 / 3e-29 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10013618 [exp] 114 / 3e-29 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10000333 [exp] 96 / 6e-22 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10014526 [exp] 95 / 1e-21 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 94 / 2e-21 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10021197 [exp] 93 / 4e-21 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101800 [exp] 199 / 1e-60 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 160 / 7e-46 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 153 / 2e-43 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 142 / 7e-39 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 140 / 2e-38 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 140 / 2e-38 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 137 / 6e-37 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 125 / 7e-33 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 119 / 3e-31 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 98 / 2e-22 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015901 pacid=23163273 polypeptide=Lus10015901 locus=Lus10015901.g ID=Lus10015901.BGIv1.0 annot-version=v1.0 ATGAGAATCAGAAAACTCTTCCCTTCTCAACCTCCCAACATTAACGACGACCCTCTAGCCTGTTACGGACCTTGCTGCCCTTTCAACTGCTACAGCTTCT ACTCTCCTCCACCTCCTCCGCCGCTGCAAAATGACCAGCGAATCTCTCCCGCCATCATCACAATCGTCTCCCTCTTATCCTTCACCTTCCTTCTCGTCAG CTACTACTTCATCTTCGGCAGGTCCTGGTTGGAGCGGCGGCGGAGGAGGTCAAACCACCAAGAAGCCGACCATCCAACCGCCGACAACCGAGACGGCGGC GACGATGGTTTTCAATTTCTGGGTCAGAATCAGGTCCACCATCCGATCTGGCACATCGCCACCGTTGGATTGCAGCAATCGGTGATCAATTCCATCACCG TGTGTAAATACAAGAAGGGGCAAGGTCTGATCGAAGGAACAGAGTGCTCTGTTTGTCTGAACGAATTTCATGAGGACGCGATGCTCCGGCTGCTGCCCAA ATGCAACCATGCTTTCCACGTTTCTTGCATCGATACGTGGCTCCGTTCCCACACCAACTGCCCGCTCTGTCGAGCCCATATCGTCAATGAAGTTCGGCCC GGTTCCGGTCCCGTTTCAGCCCATCATGACGGTTCGAGCCCAAACCCGGCTGCAGCCCAGATGGAGAATTCCGGTGATGTAAGGGTGGTTAGTACGGACG GAGGTGAGCGAGCTGATGTGACGAACAACAACTGCGACAGTGAATTGAAAGAGGAGGAGGAGGAGGAAGAAGATCGATCGACGGTAACGAAGAAATTGAG GAGGTCTAATTCGATGGATTCTTTACCGGATGCGGCTGTGATTCTCAGTAATTGTGAATCGGGATCTTCGAGAAACTCATCGGGTTCTTCTTCTTCTTCA ACTTCGACTACGGCGGTTTCGATGAAGAGGTCTAATTCTAGCGGCGGGCGGTTCTTCTTATCGAGAATCAATAGGGGCCAGAGTGTTGTTCTTCCGTTGT GA
AA sequence Show only first row Show all	>Lus10015901 pacid=23163273 polypeptide=Lus10015901 locus=Lus10015901.g ID=Lus10015901.BGIv1.0 annot-version=v1.0 MRIRKLFPSQPPNINDDPLACYGPCCPFNCYSFYSPPPPPPLQNDQRISPAIITIVSLLSFTFLLVSYYFIFGRSWLERRRRRSNHQEADHPTADNRDGG DDGFQFLGQNQVHHPIWHIATVGLQQSVINSITVCKYKKGQGLIEGTECSVCLNEFHEDAMLRLLPKCNHAFHVSCIDTWLRSHTNCPLCRAHIVNEVRP GSGPVSAHHDGSSPNPAAAQMENSGDVRVVSTDGGERADVTNNNCDSELKEEEEEEEDRSTVTKKLRRSNSMDSLPDAAVILSNCESGSSRNSSGSSSSS TSTTAVSMKRSNSSGGRFFLSRINRGQSVVLPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	0	1
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	1.7	0.9783
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	2.6	0.9591
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	3.2	0.9746
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	3.5	0.9647
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	4.6	0.9706
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	6.2	0.9467
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	6.5	0.9604
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	6.7	0.9614
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	8.4	0.9520
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	9.9	0.9543

Compare expression of checked genes

Lus10015901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.