Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72210 228 / 4e-72 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 216 / 1e-67 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 145 / 2e-40 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 140 / 2e-38 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 138 / 4e-37 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 129 / 5e-34 bHLH bHLH071 beta HLH protein 71 (.1) AT3G61950 128 / 8e-34 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G24140 118 / 2e-29 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 92 / 1e-20 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 87 / 9e-20 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029950 [exp] 216 / 8e-67 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 216 / 1e-66 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 152 / 2e-42 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 144 / 1e-39 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 126 / 5e-32 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 118 / 2e-31 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 116 / 1e-28 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 107 / 3e-27 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 98 / 2e-22 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101900 [exp] 264 / 8e-86 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 213 / 1e-65 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 211 / 3e-65 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 184 / 5e-55 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 175 / 9e-52 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 174 / 2e-51 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.005G071100 [exp] 163 / 3e-47 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 143 / 1e-38 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 142 / 3e-38 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 126 / 2e-32 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015902 pacid=23163293 polypeptide=Lus10015902 locus=Lus10015902.g ID=Lus10015902.BGIv1.0 annot-version=v1.0 ATGGCACTGGAAGCAGTGATCTACTCCCTAGACCCGTTTGCTTACAGCAACAACAACAAGGAGCACTACTATGGCCTCCTCCAGCTAGATAATGACTACA ACAACAGTACTAGTAGTCCCACCCAGCATCAGCAGCTTCATCACGTAGCAGCTACCAGCAGCTACTGGGATTCCGGGATTCAAGTGCCCCAACTACTGCT ACATGATGTCACAAGTTATAATAACTATCATTCTTCCTCTCCTGAGCCCTGCAACCAACAACAACATCAACATCAATTCTATAAAACAGATGAAATGGTG GAGGAGGACCCACCTAGCAGCTCGATCCGGAGGAAGAGGAGGAGGAGGACGAAGAGCAGGAGCAAGAACAAGGAGGAGATTGAGAACCAGAGGACGACTC ACATCGCCGTCGAGAGGAATCGAAGAAAACAGATGAATCACTATCTTGCCCTCCTCCGCTCCCTCATGCCCCCTTCCTACGTTCAAAGGGGAGACCAAGC TTCAATAATTGGCGGAGCAATAAACTTCGTCAAGGAGCTAGAACAAATCTTGCAAGCCGTGGAAGCTCGCAGAACCACCGCGCATCAGCATCATCAACAA GACGACGATGACCGGGAGGCACCATGTAATAATAATGGGGACCAAGCTTCAATCATTGGAGGAGCAATAAACTTCGTGAAGGAGCTGGAGCAAATCTTAC AAGCCGCGGAAGCTGGCAGAACGACGACGTCACATCAACAGGACGACAATGACCGGCCGACACCATCTAATAATAATGTCCGGCTACCATCGTCGTCGTT GTTTGCCGACTTCTTCACGTTCCCACAGTACTCAACTCATCTAACGCAGCCGGAAGTACCGGTTGAGGTGGCAGAGTCGTCGTCTTCGGATACGCCCCGA AATTTCGCAACGGCAGTTGGGGAGATAGAGGTGACGATGGTGGAGAGCCACGCCAACATAAAAATCCTAGCGAAGAAGCAACCGAGTCAGCTGCTTAAGT TGGTGGCCCAGATGCAAAACCTCAGGCTTACCATCCTTCACCTCAACGTCACAACTACTGCTCATCAGAAGATGGTCCTTTATTCTCTCAGCATCAAGTT GGAGGAAGGGTGCCATCTTAACACGGTGGATGAGATTGCAGCTGCCGTCAATGAGATGCTCCGGCGGATTCAAGAGGAAGCTGCTTTTACCTGA
AA sequence Show only first row Show all	>Lus10015902 pacid=23163293 polypeptide=Lus10015902 locus=Lus10015902.g ID=Lus10015902.BGIv1.0 annot-version=v1.0 MALEAVIYSLDPFAYSNNNKEHYYGLLQLDNDYNNSTSSPTQHQQLHHVAATSSYWDSGIQVPQLLLHDVTSYNNYHSSSPEPCNQQQHQHQFYKTDEMV EEDPPSSSIRRKRRRRTKSRSKNKEEIENQRTTHIAVERNRRKQMNHYLALLRSLMPPSYVQRGDQASIIGGAINFVKELEQILQAVEARRTTAHQHHQQ DDDDREAPCNNNGDQASIIGGAINFVKELEQILQAAEAGRTTTSHQQDDNDRPTPSNNNVRLPSSSLFADFFTFPQYSTHLTQPEVPVEVAESSSSDTPR NFATAVGEIEVTMVESHANIKILAKKQPSQLLKLVAQMQNLRLTILHLNVTTTAHQKMVLYSLSIKLEEGCHLNTVDEIAAAVNEMLRRIQEEAAFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	0	1
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	1.0	0.9828
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	2.0	0.9513
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	3.0	0.9471
AT5G03670			unknown protein		Lus10035565 [exp]	4.5	0.9219
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	4.6	0.9350
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	4.9	0.9183
AT1G19990			unknown protein		Lus10033141 [exp]	4.9	0.9340
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	5.0	0.9407
AT1G65700			Small nuclear ribonucleoprotei...		Lus10042884 [exp]	5.3	0.9120
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	6.0	0.9332

Compare expression of checked genes

Lus10015902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.