Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 578 / 0 MATE efflux family protein (.1) AT5G44050 547 / 0 MATE efflux family protein (.1) AT5G10420 536 / 0 MATE efflux family protein (.1) AT1G33110 422 / 1e-143 MATE efflux family protein (.1.2) AT1G33100 414 / 2e-140 MATE efflux family protein (.1) AT1G47530 407 / 8e-138 MATE efflux family protein (.1) AT1G33090 402 / 1e-135 MATE efflux family protein (.1) AT1G33080 400 / 4e-135 MATE efflux family protein (.1.2) AT5G38030 380 / 4e-127 MATE efflux family protein (.1) AT1G61890 378 / 2e-126 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020952 [exp] 785 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 604 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 600 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 562 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 466 / 3e-161 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 436 / 4e-149 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 409 / 1e-138 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 397 / 2e-134 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 399 / 3e-134 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102100 [exp] 672 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 610 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 522 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102000 [exp] 464 / 4e-162 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.013G069700 [exp] 436 / 2e-149 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.015G147600 [exp] 394 / 1e-132 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.019G063500 [exp] 394 / 4e-132 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 392 / 5e-132 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 391 / 1e-131 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 389 / 1e-130 AT3G03620 533 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10015903 pacid=23163281 polypeptide=Lus10015903 locus=Lus10015903.g ID=Lus10015903.BGIv1.0 annot-version=v1.0 ATGAGAAACAGCACCAACCCACAATCAGATATTCAACACTCCGATGGACCAAATCTCCACCGCCCCCTCTTACCTCCTACCAAACACCACCACGCCGCCG CCGCCGACGACGAAAACTACAAGCTTTCGTCAAAGCTATGGATCGAAACAAAGAAACTATGGCAGATCGTCGGTCCCGCCCTCTTCAGCCGCATCGCCTC CTTCGCTATGAACATCATCACCCAAGCCTTCGCCGGCCACCTTGGCGACGTCGAGCTCGCCGCCATCTCCATCGCCAACACCGTCATCGTCGGCTTCAAT TTCGGCCTCCTCCTCGGGATGGCGAGTGCACTCGAGACGCTATGCGGACAAGCGTTCGGAGCAAAGCGGTACCACATGCTGGGAATCTACGTACAGAGGT CATGGATAGTGTTATTCTGCTGCTGCTTCCTCCTCCTCCCACTCTACGCCTTCGCCACTCCGGTCTTGAAGTGGCTCGGCCAGCCGGATGACGTGGCGGA GATGTCGGGTGAGGTGGCACTCTGGCTGATCCCTCTCCACTTCAGCTTCGCGTTCCAGTTCCCGCTCCAGCGGTTCCTGCAGTGCCAGCTGAAAAACAAC GTCATAGCTTGGGTCTCTCTCGTCGCCTTGCTGGTCAACATCTTGACCAGCTGGCTGTTCATCTACGTCTGGGAATTCGGTGTGGTCGGAGCCGCCATTG CTCTCGACGTTTCGTGGTGGGTCCTGGTGTTCGGGATGTTGGGTTATGCTGTTCTTGGCGGTTGTCCTCTGACGTGGACTGGGTTCTCGGTTCAAGCCTT TTCCGGGCTCGGCGAGTTCCTCAAGCTCTCTGCTGCCGCTGGAGTCATGCTCTGTCTGGAGAATTGGTACTATAGGATACTGATACTGATGACAGGGTAC TTGAAAAATGCTACTTTGGCAGTTGATGCGCTTTCCATCTGCATGAGCATTAATGGGTTTGAGATCATGATTCCACTAGCGTTTTTTGCAGCCACTGGCG TGAGGGTGGCGAATGAGTTGGGGGCAGGGAATGGGAAAGCAGCCAAGTTCGCAACGGCGGTAGCGGTGGCGCAATCAACAGTTATTGGGTTGGTTTTCTG CGTACTGATAATGATACTGAGGGAGAAGATGGCTTTGATCTTCACTTCCAGCGCTGATGTTCTTGCACAAGTTGATAATCTCTCCTTGCTGTTGGCCATC ACCATTCTTCTTAACAGCGTTCAACCAGTTCTCTCAGGTGTGGCAGTTGGGTCGGGGTGGCAGGCAACAGTAGCATATATAAACTTGGGGTGCTACTACG TGGTTGGCCTCCCACTTGGGATTCTTATGGGATGGGCTTTCAACTTGGGAGTTGAGGGGATATGGGGAGGAATGATATTCGGTGGAACTTTCATACAGAC AGTTATATTGGCTGTTATCACATTTAGATGTGATTGGGACGAAGAGGTAAGCTTCTTTCTTCTAACGTTCTCTGTTCTACGTAAGTTTTCTTGTATCGTT CTAATTTTATCGGACGTACCCGAAAGGACGTTACTTTGA
AA sequence Show only first row Show all	>Lus10015903 pacid=23163281 polypeptide=Lus10015903 locus=Lus10015903.g ID=Lus10015903.BGIv1.0 annot-version=v1.0 MRNSTNPQSDIQHSDGPNLHRPLLPPTKHHHAAAADDENYKLSSKLWIETKKLWQIVGPALFSRIASFAMNIITQAFAGHLGDVELAAISIANTVIVGFN FGLLLGMASALETLCGQAFGAKRYHMLGIYVQRSWIVLFCCCFLLLPLYAFATPVLKWLGQPDDVAEMSGEVALWLIPLHFSFAFQFPLQRFLQCQLKNN VIAWVSLVALLVNILTSWLFIYVWEFGVVGAAIALDVSWWVLVFGMLGYAVLGGCPLTWTGFSVQAFSGLGEFLKLSAAAGVMLCLENWYYRILILMTGY LKNATLAVDALSICMSINGFEIMIPLAFFAATGVRVANELGAGNGKAAKFATAVAVAQSTVIGLVFCVLIMILREKMALIFTSSADVLAQVDNLSLLLAI TILLNSVQPVLSGVAVGSGWQATVAYINLGCYYVVGLPLGILMGWAFNLGVEGIWGGMIFGGTFIQTVILAVITFRCDWDEEVSFFLLTFSVLRKFSCIV LILSDVPERTLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	0	1
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	1.4	0.8588
					Lus10033740 [exp]	3.2	0.8039
AT5G43150			unknown protein		Lus10004910 [exp]	4.0	0.8594
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	4.2	0.8428
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	7.7	0.7975
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	9.4	0.8192
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	9.5	0.7986
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	10.1	0.7954
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	11.4	0.7900
AT5G43150			unknown protein		Lus10010543 [exp]	12.2	0.8320

Compare expression of checked genes

Lus10015903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.