Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 182 / 1e-53 MATE efflux family protein (.1) AT5G10420 139 / 1e-37 MATE efflux family protein (.1) AT1G33100 132 / 8e-35 MATE efflux family protein (.1) AT1G33110 127 / 3e-33 MATE efflux family protein (.1.2) AT1G33080 127 / 6e-33 MATE efflux family protein (.1.2) AT5G44050 125 / 1e-32 MATE efflux family protein (.1) AT1G47530 124 / 4e-32 MATE efflux family protein (.1) AT1G12950 122 / 3e-31 RSH2 root hair specific 2 (.1) AT1G33090 119 / 2e-30 MATE efflux family protein (.1) AT1G11670 119 / 3e-30 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020951 [exp] 358 / 4e-122 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 196 / 3e-59 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 195 / 2e-58 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 177 / 1e-51 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 177 / 1e-51 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 137 / 4e-36 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 133 / 2e-35 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 122 / 4e-31 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 115 / 5e-29 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160700 [exp] 235 / 5e-74 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102100 [exp] 192 / 2e-57 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 172 / 9e-50 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102000 [exp] 162 / 5e-47 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.013G069700 [exp] 130 / 4e-34 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.013G069600 [exp] 126 / 6e-33 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 122 / 3e-31 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 120 / 1e-30 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 119 / 4e-30 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G139500 [exp] 117 / 3e-29 AT3G03620 521 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10015904 pacid=23163326 polypeptide=Lus10015904 locus=Lus10015904.g ID=Lus10015904.BGIv1.0 annot-version=v1.0 ATGGGGCAGCCAGCGGATGTTGCTGAGCTGACAGGTCTAGTGGCTTTATGGTCAATACCTTTTCACTTGAGTTTCCCATTTCAGTTCTCATTGCATAGAT TCTTGCAGTGCCAGCTTAAGACTGGAGTCATAGTTTGGGTCTCCGGCGGAGCTCTTCTTCTCAATGTCCTAGTGAGTTGGTTTTTCGTTTACAAGATGCG TGTTGGGATCCTCGGGACTGCTATCACTCTCGATTTCTCTTGGTGGGTTACTGTCTTGGCCATGTTTCTCTACTGTACATGTGGTGGCTGTCCCGAATGC TGGACTGGTACTCTGCTCAAGCTTTTGTTGGACTTTGGGACTTCTTCAAACTTGCTGGTCCGTGTTGCTCATCAGTTTGGCGCAGGAAACGCAAAAGGTC CCCAATTTGCAGCCATAATGTCCGTGATGACATCACTAGCAACTGCTATATTCTTCGGGTTATTTGTCCTGGTCTTTCCCGAAAACCTAGCTGCAATCTT TACATTAAGCACCCCAGTTGTCACAATGGTTAAAAAACTTGGCCTCATTGCTGGCTTTCACCTTCATGTTCAACTCTATTCAACCTGTTCTTTCTGGTCA GTGACCTGCCATACAATTTATGAAAGCAACTCTTCGTGTGATTTTTTTGTTAAATTTTGGTTGGTTTTTTTCGATTCAGGTGTGGCAGTTGGATCAGGTT GGCAAGGAGTGGTAACATTTGTAAATCTTGGAAGCTACTACATTGTTGGGGTACCACTTGGAGTGTTGTTGGGTTGGGTGCTTCAGTTCGGTGTTCGAGG ACTTTGGGGAGGAATGCTCGTTGGAACCGTGGTTCAAACAATGGTGCTGACTGTAATCACCATGAAATACCAGTGGGAGAAAGAGGTAAGTATAGGGAAC TCCTTAACAGATCAGCACAGATAA
AA sequence Show only first row Show all	>Lus10015904 pacid=23163326 polypeptide=Lus10015904 locus=Lus10015904.g ID=Lus10015904.BGIv1.0 annot-version=v1.0 MGQPADVAELTGLVALWSIPFHLSFPFQFSLHRFLQCQLKTGVIVWVSGGALLLNVLVSWFFVYKMRVGILGTAITLDFSWWVTVLAMFLYCTCGGCPEC WTGTLLKLLLDFGTSSNLLVRVAHQFGAGNAKGPQFAAIMSVMTSLATAIFFGLFVLVFPENLAAIFTLSTPVVTMVKKLGLIAGFHLHVQLYSTCSFWS VTCHTIYESNSSCDFFVKFWLVFFDSGVAVGSGWQGVVTFVNLGSYYIVGVPLGVLLGWVLQFGVRGLWGGMLVGTVVQTMVLTVITMKYQWEKEVSIGN SLTDQHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10420			MATE efflux family protein (.1...		Lus10015904 [exp]	0	1
AT3G52640			Zn-dependent exopeptidases sup...		Lus10020806 [exp]	1.0	0.8841
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	1.4	0.8811
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	11.1	0.8547
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	14.0	0.8375
					Lus10019211 [exp]	21.7	0.7508
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	22.5	0.8402
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	27.3	0.8346
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	28.7	0.8096
					Lus10042562 [exp]	28.8	0.8175
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	31.4	0.8000

Compare expression of checked genes

Lus10015904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.