Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 130 / 2e-36 MATE efflux family protein (.1) AT1G33110 123 / 2e-34 MATE efflux family protein (.1.2) AT1G33080 123 / 7e-34 MATE efflux family protein (.1.2) AT5G10420 123 / 9e-34 MATE efflux family protein (.1) AT1G33090 118 / 5e-32 MATE efflux family protein (.1) AT1G33100 118 / 7e-32 MATE efflux family protein (.1) AT5G44050 116 / 3e-31 MATE efflux family protein (.1) AT1G23300 110 / 3e-29 MATE efflux family protein (.1) AT1G12950 110 / 5e-29 RSH2 root hair specific 2 (.1) AT3G26590 110 / 6e-29 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020951 [exp] 236 / 9e-77 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 132 / 6e-37 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 132 / 6e-37 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 130 / 2e-36 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 127 / 1e-35 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 127 / 1e-34 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 120 / 1e-32 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10020307 [exp] 119 / 2e-32 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10003869 [exp] 119 / 2e-32 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160700 [exp] 150 / 4e-44 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102100 [exp] 134 / 4e-38 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 124 / 4e-34 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 123 / 8e-34 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.008G187100 [exp] 109 / 8e-29 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 109 / 1e-28 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 107 / 9e-28 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.002G132300 [exp] 100 / 1e-27 AT1G47530 196 / 4e-61 MATE efflux family protein (.1) Potri.013G069400 [exp] 105 / 2e-27 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 105 / 4e-27 AT3G03620 521 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10015905 pacid=23163320 polypeptide=Lus10015905 locus=Lus10015905.g ID=Lus10015905.BGIv1.0 annot-version=v1.0 ATGCTTTCTCATTCGGGCGGGAGAGATATGAGAGAATCTACAGAGAAAGTTCATCTACTTGCTCCAAGCAAGCCAGATATTCAGTCTCAGGAATCCCAAT CCAGTTCGACCAATCATCCTCCTCAATCAGCTGGTTTCATCACCCAGATATGGCTGGAATCCAAGAAGATGTGGCTAATTGCTGGGCCTTCAATCTTCAG CCGGGTCGCCATGTTCTCGTTGACTGTCGTCACCCAATACTTCGCTGGCCACTTGGGCGACCTCAATCTCGCTTCCATCTCCATCGTCTGTACCATCATC ATCGGCATTAGTTTCGGCGTCCTTCTAGGGATGGCGAGTGCGCTGGAGACGTTGTGCGGCCAAGCCTACGGAGCTAAACAATACCATATGTTAGGGATTT ATATGCAACGTTCTTGGATTGTTCTCACGTGA
AA sequence Show only first row Show all	>Lus10015905 pacid=23163320 polypeptide=Lus10015905 locus=Lus10015905.g ID=Lus10015905.BGIv1.0 annot-version=v1.0 MLSHSGGRDMRESTEKVHLLAPSKPDIQSQESQSSSTNHPPQSAGFITQIWLESKKMWLIAGPSIFSRVAMFSLTVVTQYFAGHLGDLNLASISIVCTII IGISFGVLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10015905 [exp]	0	1
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10005770 [exp]	11.1	0.6834
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	17.2	0.7041
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	20.3	0.6098
AT5G09580			unknown protein		Lus10020476 [exp]	52.6	0.6380
AT4G15020			hAT transposon superfamily (.1...		Lus10000517 [exp]	69.5	0.6208
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	74.6	0.6328
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	116.3	0.6071
					Lus10002267 [exp]	170.3	0.5363

Compare expression of checked genes

Lus10015905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.