Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04730 283 / 2e-96 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G14550 256 / 6e-86 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 250 / 1e-83 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 241 / 4e-80 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT4G29080 203 / 4e-64 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 196 / 2e-61 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 196 / 7e-61 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT1G04240 145 / 4e-43 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 144 / 9e-43 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 138 / 1e-40 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006585 [exp] 358 / 2e-125 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 253 / 4e-84 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10019241 [exp] 208 / 3e-66 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10014731 [exp] 204 / 4e-65 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10034962 [exp] 199 / 2e-62 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10039487 [exp] 197 / 2e-62 AT4G14550 232 / 5e-77 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10011583 [exp] 195 / 4e-61 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10002724 [exp] 191 / 1e-59 AT3G23050 212 / 5e-68 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) Lus10024854 [exp] 187 / 2e-58 AT3G04730 221 / 3e-72 indoleacetic acid-induced protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041400 [exp] 299 / 1e-102 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 291 / 2e-99 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 268 / 9e-91 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.008G161200 [exp] 263 / 2e-88 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 259 / 3e-87 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 249 / 1e-82 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.003G051300 [exp] 210 / 3e-66 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 201 / 1e-62 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 200 / 2e-62 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.001G177400 [exp] 191 / 2e-60 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10015907 pacid=23143788 polypeptide=Lus10015907 locus=Lus10015907.g ID=Lus10015907.BGIv1.0 annot-version=v1.0 ATGACGACGGCAGCGGAGCCTGATCATCACAAGTACGCAACGATTAATTTTGAGGAGACGGAGCTCCGGTTGGGTCTGCCGAGTGTCAAAGGAGATCAAG TGCTGTTGGCCAGGAGTAGCGGTGGCAAGAGAGGTTTCTCCCAGACCGTCGATCTCAAGCTCAACTTGTCGTCCAACCCCATCGACGGTGAAGATGACTT GTCTACAAATCAAGAGAAGATGAAGGATAAATTATCTTCTTCTTTTTCTGCTGCTGCAAATTCTAACAACGATCCCGCTAAGCCGCCTGCCAAAGCACAA GTAGTGGGATGGCCGCCCATTCGGTCGTTCAGGAAGAACGTGATGGCTGTCCAGAAAAGCAATAATAATGGCGACGAAACTTCCGACCACAATAATCAAA AGAGTAGTACATCGGCGGCGGCCGCAACAACATCATCAAGCAGCGCAGCTTTCGTGAAGGTGAGCATGGATGGAGCTCCATACCTTCGGAAAGTTGACTT GAAACTCTATCAAAGCTACCCTCAACTCTCCGAGGCCCTCGCTAAAATGTTCAGCTCCTTCAGCACTATCGGCAACTGCGGCCCAAATGGGATGAAGGAT TTCATGAGTGAGAGCAAGTTGGTCGATCTCTTGAACGGCTCTGAGTATGTACCAACTTATGAAGACAAAGATGGCGATTGGATGCTTGTTGGAGATGTTC CCTGGAAGATGTTCGCAGAGTCATGCAAGCGGTTGAGATTAATGAAAGGGTCTGAAGCAATTGGACTTGCACCTAGAGCAGTGGAGAAGTGCAAGAACAG AAGCTGA
AA sequence Show only first row Show all	>Lus10015907 pacid=23143788 polypeptide=Lus10015907 locus=Lus10015907.g ID=Lus10015907.BGIv1.0 annot-version=v1.0 MTTAAEPDHHKYATINFEETELRLGLPSVKGDQVLLARSSGGKRGFSQTVDLKLNLSSNPIDGEDDLSTNQEKMKDKLSSSFSAAANSNNDPAKPPAKAQ VVGWPPIRSFRKNVMAVQKSNNNGDETSDHNNQKSSTSAAAATTSSSSAAFVKVSMDGAPYLRKVDLKLYQSYPQLSEALAKMFSSFSTIGNCGPNGMKD FMSESKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWKMFAESCKRLRLMKGSEAIGLAPRAVEKCKNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	0	1
AT1G67050			unknown protein		Lus10009160 [exp]	1.4	0.9092
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	2.8	0.8679
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	4.2	0.8871
AT1G67050			unknown protein		Lus10028485 [exp]	4.2	0.8372
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	4.9	0.8689
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	7.4	0.8519
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	15.0	0.8197
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	16.1	0.8084
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	17.3	0.7927
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	19.3	0.7958

Compare expression of checked genes

Lus10015907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.