Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04740 1276 / 0 MED14, SWP, ATMED14 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006586 [exp] 3324 / 0 AT3G04740 2113 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053700 [exp] 2565 / 0 AT3G04740 1287 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1) Potri.013G041201 [exp] 2561 / 0 AT3G04740 1281 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08638 [flax] [poplar] Med14 Mediator complex subunit MED14
Representative CDS sequence Show only first row Show all	>Lus10015908 pacid=23143765 polypeptide=Lus10015908 locus=Lus10015908.g ID=Lus10015908.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTGGGGCAGCAAACGGTCGACTTCTCCACTCTTGTGAGTCGGGCTGCGGAGGATTCCTTCCTTTCTTTTAAGGATTTGGTGGAAAAATCCA GGTCGGCCGACCAGTCTGATTCCGAGAGGAAGATTGGGCTTCTCAAGTACTTGGTTAAGACCAGGCAGCGTATGCTCAGGCTTAATGTATTAGCTAAGTG GTGCCAACAGGTTCCATTGATACAATACTGTCAGCAACTACAATCTACAGTAGCTAGTCATGATACATGCTTCACACAAGCCGCAGATTCATTGTTCTTT ATGCATGAAGGACTGCAGCAAGCTCGCGCTCCTATTTATGATGTCCCATCTGCTGTCGAAGTACTCCTTACTGGATCCTATCAGCGGTTGCCAAAGTGTG TGGAAGATATAGGTCTCCAGGGCGTGTTAAGTGGGGATCAACAGAAGCCAGCTCTCAGAAAGCTGGACACTCTCGTGCGGACTAAGTTACTTGAAGTTGC ATTGCCCAAGGAGTTCTCTGAGGTAAAAGTCTCCGATGGAACGGCCCTGCTTCGGGTAGACGGTGAATTTAAAGTACTAGTTACTCTTGGTTACCGAGGA CACTTATCGTTGTGGAGAATATTGCATTTAGAGTTGGTTGTTGGTGAAAAAAGTGGCCCTGTGAAAATGGAAGAGTTACGCAGGTACGCCCTTGGTGATG ATTTGGAACGCAGAATGGCAGCGGCAGAAAACCCATTCGTGATATTGTATTCAGTGCTCCACGAGCTCTGTGTTTCTCTTGTTATGGATACTGTGATAAG ACAAGTTCAAGCATTGCGTCTAGGGAGGTGGAGGGGGGCAATTTGTTTTGAGATAATATCTGATGGTGGTACTTCCTCGCAATTAAATCAAGATGGAGAA GCTGATTCTGCAGGTATGCGAACACCTGGGTTGAAAATTATGTACTGGCTGGACCTGGATAAGAATTCTGGTGCATTGGATTCTGGGGCAAGCCATGTTC TAAAAATTGAGCCAGGCGCAGATCTACAAATAAGGTGTACGCACGGCACATTTGTTATAGATCCATCCACAGGAAAAGAAGCAGAATTTTCTCTCGACCA AAGCTGCATTGATGTTGAGAACTTGTTGATGAGAGCAATATGTTGTAACAGATATACTCGGCTTCTTGAAATTCAAAAAGAGCTGGGGAAAAACATCCAG ATCAGTCGTGCTGCAGGAGATGTTGTCCTTCGGCCCCACACGGATGAACCAGCTTTTCACCTTATAAAGAAGCTGTCTCTGTCTGAAGGCAGGACATATG AGGCTCAAGAAGTATTATGTGTGCGTGCCTACGGCTCATCATTTTTCATGCTTGGGATAAATATAAGGACTGGTCGCTTTCTGATCCGTTCAACCCAGAA TGTACTCCCACCCACAGTGTTGTCAGAATGTGAAGAAGCTCTAAATCATGGAACCATCACTGCAGCTGAAGTTTTTACTAGCTTGCGAAACAAAAGCATC TTGCACTTAATTGCTTCTATAGGCAGGTTTTTAGGGCTGGAGGTGTATGAACATGGTTCTGCTGCTGTTAAAGTGCCTAAGAGTGTTTTGAATGGCTCAC CTATGTTGCTAATGGGGTTCCCTGATTGTGGGAGCTCATATTTCTTGCTAGTGCATCTTGATAAGGATTTCAAATCTCAGTTTGCATTGCTAGAAACACA GCCTGATCCATCTGAAAGGGTGTCTTCTGGTGATGTAAATCAAGTAGTGCGTGTCAAGAAGATTGATACTAGCCGTATGCAGATGCTTGAAGATGAATTG GATCTAAGTCTGCTTAACTTGGAAAAGTTGAGTTCGTTGTTACCGAAAGCTGGTGGTGGTCCTCTTCAACCTTCTGAACATGGCTTGACTGACTTCAGCC TTGAGGGTCCTCTGCAAATTGCTGACGGTGCACCTTCCAGTTTTTCATCTATTGTTGATGAAGTATTTGAGCTGGAGAAAGGAGCTTCTGTATCTGCAAT GGGCGTTGAGAAACTCCCATCTTCAATCAATCTACTGTCAAATTATGGTTCTGTTCCTATCAATATCCATGGTGTTAAAGTTGGAACACCTCCTAAGTGG GAAGGACAGATGAATAATATGAATTCGTTAAAAAATTCCAGTTTGGGTTCACACTACAATGGTTCTTTTTACCAGTCTAGCAAGGGTCACTCAAGTTCAT TCAGTTCATTATCTCCAGCCATTGGGAGAAATTCCAACGTGAAAAAGCTGTCAGGTTCAAAATCTGACCAAGATTTGGCTTCACTTAGATCTCCGAACTC TGTTGAGGTGACTTCAAATGTTTCAATGGATGAAGATCATCTGAGACTTCTGAATGACAGTGCCATGGATGGATTGTCTGGAAGGTCAGCACTACTATTA TCTCCTCCCCAGACCTCAGGTTCTCAAGTTTCTCCGGCTAGTGTGAAATCTAATGGACTCAGAAGCATTCTTCCTGGGTTGTCAGCTGGAACCACAAGAG TAAATGGACCAGGCTCTTTAGCTACAACTCCCGTATCCCAGGAAAAAGGAGATGGTTCCATTGATGACATGTCCAAACATGAACAAAATCCGAGGAAGCG GACGATTTCAGATGTGTTGAGTTTGGTTCCTTCTCTGCAAGATATAGATGCAAGAGCAGGATTGCTCAAGAAAAGGAAAACCTTCGAATTGTCTCAATCT CAGCAGCTGTTATCAAAGACACTTAACTCATCAGAAACGTTGAATAAAAGTGAAGAACTCAACTACGGGGATCTTCTGGCTGAAGCTAACATAGGCAACA TTCCCTCTAGCATTTACATTTCTTCGCTTCTTCATGTCATCAGACATTGTTCACTTTGCATCAAGTATGCCAGACTTACGAGCCAGATGGAGGTGCTTGA TATTCCTTATGTAGAAGAAGTGGGCTTGAGAAGTGGATCTTCAAATATATGGTTTAGACTCCCATTTGCACGAGGTGATCCATGGCAACACATATGCTTA CGGCTTGGAAGACCTGGAAGCATGTACTGGGATGTCAAAATAAATGATCAGCACTTCAGGGACCTTTGGGAACTTCAAAAGGGAAGCAGTAGCACTCCTT GGGGCTCTGGGGTTCGTATTGCTAATTCATCTGATGTGGATTCCCATATTCATTATGATTCGGAAGGGGTAGTCCTCAGCTATCAGTCAGTTGAGAGTAA TAGTATAAAGAAGCTAGTTTCAGATATTCGCCGACTTTCTAATGCTAGAACATTTGCTCTTGGGATGCGGAAGATTCTTGGAGTGAAGGCAGATGAAAAA TTGGATGAAAGCAGTGCAAATTCTGACTCTAAAGTGTTTACTGGGGGCAGAACTGGTTTGGAGGCAGCGGAAAAGATATCAGAACAGATGCGGAAGGCGT TCAGAATAGAGGCAGTTGGATTAATGAGTCTGTGGTTTAACTTTGGAGCAGGTGCACTAGCTCGTTTTGTTGTTCAGTGGGAGTCAGGCAAAGATGGATG TACGATGCATGTTTCTCCTGATAATCTGTGGCCTCATACTAAGTTCCTCGAAGGTTTTATTAATGGAGCGGAAGTGGCATCCCTTTTGGACTGCATTCGA CTCACTGCAGGACCTTTGCATGCGCTTGCAGCTGCAACTCGTCCTGCACGAGCTCAAGCTGGACCAGGGGTAACAGTCCCTGCTGTTTCTGCTCCAAAAC AAGCTGGGTATGTGCAACCACAGGCTGTTATACCTAGCAGTTCAAGTAACAATTTTGTGCCAACATCTGGGTCCACAGGGACTCCAGCCCAACCTGTTAG TGCTGGTCCTCTTGGAAGTCATGCTCTCCAGAATGCTGCAATGTTAGCTGCTAGTCGTGGAGGTCCTGGCATTGTTCCTAGCTCTCTCTTGCCAATTGAT GTATCTGTTGTGCTACGTGGTCCTTACTGGATCCGAATTATTTACCGCAAGAATTTCTCAGTTGACATGCGCTGCTTTGCTGGAGATCAAGTCTGGCTGC AGCCAGCAACGCCCCCTAAAGGAGGGCCATCAATTGGAGGGTCTTTACCATGTCCACAGTTTCGTCCTTTTATCATGGAGCATGTTGCGCAGGAGTTGAA TGGATTGGATCCAGGTTTCGCTGGTGGTCAACAGACAGCTGGACTGTCAAGTCCCAGCATCCAACTTCCGGTTTCAGGTTCTCAACTTTTGAGTGCTAAT GGAAATAGAGTTAGCCTTCCAAGTTCTGCAGCAATGTCCAGGGTGGCAAATCAAGTGGCAGCCCTGAACCGTGTTGCAAATGCCGTTCCAGGATCGTCAA ATTTAGCTGTTGTGAGCACTGGGTTGCCGATACGTAGATCTCCAGGTGCTGGTGTCCCTGCACATCTTAGAGGAGAGTTGAATACAGCTATTATCGGTCT TGGTGATGATGGAGGTTATGGAGGAGGGTGGGTTCCTCTTGTTGCCCTAAAGAAGGTTCTAAGGGGTATTCTTAAATACCTAGGCGTGCTTTGGCTATTT GCTCAGTTACCTGATTTGTTAAAGGAGATCCTTGGATCAATTTTGAAAGACAATGAAGGTGCTTTATTGAATTTGGACCAGGAGCAACCTGCTTTGCGCT TCTTTGTCGGAGGGTATGTTTTTGCTGTAAGCGTGCACAGAGTTCAACTTCTTCTTCAGGTACTTAGTGTTAAGCGTTTTCATCATCAGCAGCAACAGCA GCAACAGAACTCTGCTGCCTCTCAGGAAGAACTTACTCAATCAGAGATTGGGGAGATATGTGACTATTTTAGTCGGCGTGTTGCATCTGAGCCCTATGAT GCTTCTCGTGTTGCATCATTCATAACCCTTCTCACATTGCCTATATCAGTGTTGAGAGAATTTTTGAAGTTAATAGCGTGGAAGAAAGGACTGGTACAGG CCCAAGGTGGTGGAGAAATGGCTCCTGTACAGAAACCTCGTATTGAGTTATGTCTTGAGAATCATAATGCAGCAGATGAGAAATCCGAAAATTCATCTGT TGCCAAAAGCAATATCCACTACGATAGACCTCATAATTCTGTGGACTTTGCGTTGACCGTGGTACTTGATCCAGCACACATACCTCATATTAATTCAGCT GGGGGTGCAGCTTGGCTGCCCTACTGTGTTTCGGTGAGGTTGCGATACTCATTTGTTGACAATCTGAACGTGTCTTTCCTGGGAATGGAAGGAAGCCATG GAGGACGAGCTTGCTGGTTGCGAGCTGATGATTGGGAGAAATGCAAGCAGCGAGTAGCCAGAACCGTGGAAGTTAGTGGCAGTTCGGCAGGAGATCGTGA TCTTAGTCAAGGAAGGTTGAGAATAGTAGCAGATAACGTGCAAAGAGCATTGCATTTGTGTCTGCAGGGTCTGAGAGATGGTAATGGAGTAACTTCAAGC GGTGGCCCAACTTGA
AA sequence Show only first row Show all	>Lus10015908 pacid=23143765 polypeptide=Lus10015908 locus=Lus10015908.g ID=Lus10015908.BGIv1.0 annot-version=v1.0 MAELGQQTVDFSTLVSRAAEDSFLSFKDLVEKSRSADQSDSERKIGLLKYLVKTRQRMLRLNVLAKWCQQVPLIQYCQQLQSTVASHDTCFTQAADSLFF MHEGLQQARAPIYDVPSAVEVLLTGSYQRLPKCVEDIGLQGVLSGDQQKPALRKLDTLVRTKLLEVALPKEFSEVKVSDGTALLRVDGEFKVLVTLGYRG HLSLWRILHLELVVGEKSGPVKMEELRRYALGDDLERRMAAAENPFVILYSVLHELCVSLVMDTVIRQVQALRLGRWRGAICFEIISDGGTSSQLNQDGE ADSAGMRTPGLKIMYWLDLDKNSGALDSGASHVLKIEPGADLQIRCTHGTFVIDPSTGKEAEFSLDQSCIDVENLLMRAICCNRYTRLLEIQKELGKNIQ ISRAAGDVVLRPHTDEPAFHLIKKLSLSEGRTYEAQEVLCVRAYGSSFFMLGINIRTGRFLIRSTQNVLPPTVLSECEEALNHGTITAAEVFTSLRNKSI LHLIASIGRFLGLEVYEHGSAAVKVPKSVLNGSPMLLMGFPDCGSSYFLLVHLDKDFKSQFALLETQPDPSERVSSGDVNQVVRVKKIDTSRMQMLEDEL DLSLLNLEKLSSLLPKAGGGPLQPSEHGLTDFSLEGPLQIADGAPSSFSSIVDEVFELEKGASVSAMGVEKLPSSINLLSNYGSVPINIHGVKVGTPPKW EGQMNNMNSLKNSSLGSHYNGSFYQSSKGHSSSFSSLSPAIGRNSNVKKLSGSKSDQDLASLRSPNSVEVTSNVSMDEDHLRLLNDSAMDGLSGRSALLL SPPQTSGSQVSPASVKSNGLRSILPGLSAGTTRVNGPGSLATTPVSQEKGDGSIDDMSKHEQNPRKRTISDVLSLVPSLQDIDARAGLLKKRKTFELSQS QQLLSKTLNSSETLNKSEELNYGDLLAEANIGNIPSSIYISSLLHVIRHCSLCIKYARLTSQMEVLDIPYVEEVGLRSGSSNIWFRLPFARGDPWQHICL RLGRPGSMYWDVKINDQHFRDLWELQKGSSSTPWGSGVRIANSSDVDSHIHYDSEGVVLSYQSVESNSIKKLVSDIRRLSNARTFALGMRKILGVKADEK LDESSANSDSKVFTGGRTGLEAAEKISEQMRKAFRIEAVGLMSLWFNFGAGALARFVVQWESGKDGCTMHVSPDNLWPHTKFLEGFINGAEVASLLDCIR LTAGPLHALAAATRPARAQAGPGVTVPAVSAPKQAGYVQPQAVIPSSSSNNFVPTSGSTGTPAQPVSAGPLGSHALQNAAMLAASRGGPGIVPSSLLPID VSVVLRGPYWIRIIYRKNFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTAGLSSPSIQLPVSGSQLLSAN GNRVSLPSSAAMSRVANQVAALNRVANAVPGSSNLAVVSTGLPIRRSPGAGVPAHLRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLF AQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQNSAASQEELTQSEIGEICDYFSRRVASEPYD ASRVASFITLLTLPISVLREFLKLIAWKKGLVQAQGGGEMAPVQKPRIELCLENHNAADEKSENSSVAKSNIHYDRPHNSVDFALTVVLDPAHIPHINSA GGAAWLPYCVSVRLRYSFVDNLNVSFLGMEGSHGGRACWLRADDWEKCKQRVARTVEVSGSSAGDRDLSQGRLRIVADNVQRALHLCLQGLRDGNGVTSS GGPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10015908 [exp]	0	1
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	1.7	0.9422
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	4.4	0.9527
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	8.1	0.9454
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	11.7	0.9372
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	11.8	0.9211
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	12.1	0.9304
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	12.8	0.9210
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	13.4	0.9232
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	13.4	0.9362
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	14.3	0.9338

Compare expression of checked genes

Lus10015908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.