Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 202 / 2e-63 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 202 / 1e-62 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 154 / 1e-43 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 149 / 2e-42 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 142 / 8e-40 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G48560 70 / 7e-13 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 68 / 8e-13 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G18300 69 / 1e-12 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 68 / 2e-12 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 67 / 3e-12 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006587 [exp] 286 / 3e-94 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 218 / 2e-70 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 215 / 6e-68 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 211 / 2e-66 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 196 / 3e-60 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 147 / 7e-41 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 121 / 1e-31 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10014300 [exp] 71 / 2e-13 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10026008 [exp] 71 / 2e-13 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053500 [exp] 262 / 1e-85 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 244 / 2e-78 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 213 / 5e-67 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 211 / 4e-66 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 148 / 1e-40 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 148 / 2e-40 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 124 / 1e-31 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G121850 [exp] 71 / 2e-13 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.002G235400 [exp] 71 / 4e-13 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G023600 [exp] 70 / 4e-13 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015909 pacid=23143798 polypeptide=Lus10015909 locus=Lus10015909.g ID=Lus10015909.BGIv1.0 annot-version=v1.0 ATGGCGGGAAATCCTACACCGGATGGTTTGGGAGACGATTTCTTTGAGCAGATCTTAGCGGCTCAGCCGGGATATGGCGGCGGCGGTGGTGGCGGAGGAG GAGGGGAAGGGATGATGATGATGGGTTTACAGCTGGGCTCTGGCGGCGGTAGTGGAGGGATGAGAGGTGGAAACAGTAATAACAACAACAATAACAATAA CATGGGAGGAATGATGCCTTTGGGGTTGAACTTGGAGCACCATGGATTCATTAGACACCCGCCGGAAGATCAATCCGGCGGAGGTGGTGTTGGTGGTTTG GGTTCCGGAAACCTTAATAATAATAATGCTCCTTCTTCCTCTGCCACTTCTGGGATCAGTGAGAGGGATTCCGTGCACATGACAGGTTTATTCCCAGCAT TTGGACAGTTGCAAAGTCAGTCAATTAGGGCTCCTCCACCACAACTCCACCACCACCACCACCATCACAACCCCCACCAGCAATTTCAAAGCCAGCCAAC ACCAGGACCAGGACAGGTCCCTGCTGGGTTGCAGCCACCTTCCATCCGCCCACGAGTTCGAGCTAGACGAGGCCAGGCTACTGACCCTCACAGCATTGCC GAGCGGTTACGCAGAGAAAGGATTGCTGAGAGAATGAAGGCTTTGCAGGAATTGGTTCCTACTGTCAACAAGACAGATAGGGCTGCCATGCTTGATGAGA TTGTTGATTATGTCAAGTTTCTAAGGCTCCAAGTCAAGGTGTTGAGTATGAGTCGACTGGGGGCGGCAGGTGCAGTGGCTCAGCTGGTAGCTGATGTGCC GGCATCATCAGTTGAGGGAGGAGGAGGAGGTGGGGAAGAACAAGCTTGGGAGAAATGGTCAAATGATGGAACTGAGCAACAAGTAGCAAAGTTGATGGAA GAAGACGTTGGAGGTGCAATGCAGTTCCTTCAGTCAAAGGCACTCTGCATCATGCCAATATCACTTGCTTCAGCCATCTTCAGGTCTCATCCTCCACCTC CCGACCCATCATCAACCCTCGTCAAGCCTGAATCTAACCCCCATTCATGA
AA sequence Show only first row Show all	>Lus10015909 pacid=23143798 polypeptide=Lus10015909 locus=Lus10015909.g ID=Lus10015909.BGIv1.0 annot-version=v1.0 MAGNPTPDGLGDDFFEQILAAQPGYGGGGGGGGGGEGMMMMGLQLGSGGGSGGMRGGNSNNNNNNNNMGGMMPLGLNLEHHGFIRHPPEDQSGGGGVGGL GSGNLNNNNAPSSSATSGISERDSVHMTGLFPAFGQLQSQSIRAPPPQLHHHHHHHNPHQQFQSQPTPGPGQVPAGLQPPSIRPRVRARRGQATDPHSIA ERLRRERIAERMKALQELVPTVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPASSVEGGGGGGEEQAWEKWSNDGTEQQVAKLME EDVGGAMQFLQSKALCIMPISLASAIFRSHPPPPDPSSTLVKPESNPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10015909 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	6.2	0.9046
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	10.9	0.9069
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	13.2	0.8792
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	14.7	0.8886
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	15.4	0.8962
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	19.0	0.8989
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	19.7	0.8771
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	21.7	0.8784
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	21.9	0.8726
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	28.6	0.8498

Compare expression of checked genes

Lus10015909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.