Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28750 97 / 8e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) AT5G52440 56 / 1e-09 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006588 [exp] 180 / 3e-58 AT5G28750 130 / 3e-39 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10039254 [exp] 54 / 1e-08 AT5G52440 174 / 5e-53 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10027499 [exp] 54 / 2e-08 AT4G14147 254 / 2e-81 protein binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040900 [exp] 140 / 2e-42 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.005G053400 [exp] 133 / 1e-39 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.015G147100 [exp] 56 / 2e-09 AT5G52440 209 / 2e-67 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.012G144300 [exp] 53 / 2e-08 AT5G52440 216 / 5e-70 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02416 [flax] [poplar] TatA_B_E mttA/Hcf106 family
Representative CDS sequence Show only first row Show all	>Lus10015910 pacid=23143774 polypeptide=Lus10015910 locus=Lus10015910.g ID=Lus10015910.BGIv1.0 annot-version=v1.0 ATGGAGATCTCTTCCACAACCCTGTCCGTTTCTAGACTCGCGCCGGCTGGTTTTCGATTTTCTTCACCCACCTCCGCGTCCTTCAACACCATATCTCTCT TCAACAAGTCCAAGAAATGCGATTCTCTAGTCATGGGAGGAGGAAGACCCAGAATCCACAGAGCCAAAAAGGGCATGTCTTGCAATGCCTTGTTTGGGTT GGGGGTCCCTGAGCTCGTCGTGATTGCTGGAGTGGCCGCTCTAGTTTTCGGTCCCAAGAAGCTTCCTGAAGTTGGCAAGAGTATTGGTAAAACTGTCAAG AGCTTCCAGCAGGTTGGTTGTTTTAGATTCAATCTTTTAAGAGGGTTTGCTACTTGTGATGCTTTGGGAGTCGTGGCCCGGGAGCCCAACCCTGGATCTG TCGCTGCTGTTGTTGTGTGCAATGGAAACTGTCTGCCTGTCCAGAGCTCTGCTGCAAAAGAGTTTGAGAGTGAGCTGAAGAAGGAACCTGAAAGCCTAGA GGAGACCCCTGCAGAGAAAGCTGTTGCGATGAGCGAGGAGAATAAGAAGCAGCAGCAGCAGCAAGATCTTGAAGTATCAAACTCAAAGGAGAGTGTATGA
AA sequence Show only first row Show all	>Lus10015910 pacid=23143774 polypeptide=Lus10015910 locus=Lus10015910.g ID=Lus10015910.BGIv1.0 annot-version=v1.0 MEISSTTLSVSRLAPAGFRFSSPTSASFNTISLFNKSKKCDSLVMGGGRPRIHRAKKGMSCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVK SFQQVGCFRFNLLRGFATCDALGVVAREPNPGSVAAVVVCNGNCLPVQSSAAKEFESELKKEPESLEETPAEKAVAMSEENKKQQQQQDLEVSNSKESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28750			Bacterial sec-independent tran...		Lus10015910 [exp]	0	1
AT1G48460			unknown protein		Lus10032738 [exp]	9.7	0.8880
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10010292 [exp]	11.2	0.8283
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	12.2	0.8838
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	12.4	0.8750
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	23.0	0.8811
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	27.3	0.8762
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	30.4	0.8074
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	31.3	0.8667
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	33.0	0.8327
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	38.0	0.8666

Compare expression of checked genes

Lus10015910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.