Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18970 417 / 9e-143 MEF20 mitochondrial editing factor 20 (.1) AT4G21065 272 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G37380 268 / 6e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 265 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 263 / 1e-80 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 259 / 2e-79 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 256 / 3e-79 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 256 / 3e-78 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 253 / 3e-78 MEF21 mitochondrial editing factor 21 (.1) AT3G47530 254 / 5e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 275 / 2e-85 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 266 / 3e-82 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025490 [exp] 265 / 7e-82 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029853 [exp] 261 / 2e-81 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 259 / 9e-81 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005207 [exp] 263 / 2e-80 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010385 [exp] 261 / 2e-80 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002024 [exp] 255 / 3e-79 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 258 / 5e-79 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 281 / 1e-87 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 280 / 1e-87 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 276 / 3e-86 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 271 / 9e-84 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G034900 [exp] 267 / 1e-83 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G103600 [exp] 268 / 8e-83 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 266 / 2e-82 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G110800 [exp] 265 / 2e-82 AT5G61800 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 258 / 7e-80 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 257 / 1e-79 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015912 pacid=23143780 polypeptide=Lus10015912 locus=Lus10015912.g ID=Lus10015912.BGIv1.0 annot-version=v1.0 ATGCGCGAGCTTTCGCGGTTCAGGTGTTTCCCCTTGTTGGACATCAAACCAAGATCCTCACACCAACCCTCCCAAATCCTTGCTCAGTTGATAAAAAATC GTCTCACTTCACCGTCCCTTCTCGCCAAATTAATAAAGCAATACTGTCGCTGCTCCGTCTCAGATACCCGCCAAGCACATTCGATTCTCGCCACTTTTCA CTACCCAAACCTGTTTCTCTTCAACACTCTGATCCGATGCACCCACCCCAAGGACTCGATGCGTCTTTTCACCACCTGGATTTCCAAAGACGAGCTTGCT ATCGACGACTTAACCTACGTTTATGTTCTGGGTTCCTGCGTTAGATCGCCTTCATCTTCATCGTTGTGCCTGGGGAGACAGATCCAGGGACGGGTTTTGA AACATGGGTTCCTGTCGAATTTGGTTGTTTCGACCACGTTGATTCATTTTTATGGACAAAACCGGGATGTTGCTTCTGCAAGAAAGGTGTTCGATGAAAT GCCGGAGAGGAGTGTTGTCACATGGAACGCTATGATAACTGGGTATTGCTCCCAGACAGAAAAGGCCAACAATTGTGCTTATCATGCGCTTGCCTTATAC AAGAACATGTTGGTTAGTGATACTTTAGAGAAACCCAATGATACCACAGTGGTTTGCGTCCTCTCGTCGTGTTCCCAATTGGGAATGCTGGAAATCGGAG CTTGCTTCCATGGTTATTTGGAAAAGACTATCTGTATGCGGAAAATGGATGTCTACATCGGCACAGGTTTAGTCGACTTGTACTCAAAATGCGGTTGCCT CCACAGTGGTTTAAAGATTTTCAATGTAATGAGAGTGAAAAATGTGTTGACATGGACAGCTATGGCAACGGGTCTGGCCATTCATGGGAAAGGGAAAGAA GCAATGGAAGTTTTCGACGCTATGGCTGGTTCTGGTGTTAAACCCAATCTGGTAACTTTCACAAGCTTGCTTTCAGCTTGTTGTCACGCAGGTCTTGTGG AGGAAGGGCTTCAGTTGTTCGAAATCATGCAATTCAAATTCCGTCTTGAGCCTGCATTACAGCACTATGGCTGCATTGTCGATCTTCTTGGCAAGGCTGG ATACCTAAGAGAAGCATACAGGTTCATAAAGGGGATGCCAGTAGCGGCAGATGGAGTCTTGTGGCGGAGTCTGCTGAGCGCAAGTATAGTCCATGGAGAT GTTGAATTGGGCGAGGAAATATGGAAAATACTCCTCCAATTGCGTCCGGAAACAAGGAATTCAAGTGATGACTATGTAGCTTTGTCTAATATCTATGCTT CAGCTGAGAGATGGAAAGATGTGGAGAAGGTGAGAAGCGTGATGAAGGTCAAGAGTATAGTAGTGAACCAACCAGGATCAAGCTTAGTTCAAAGCATTAG CACCAATAACCCTTTGGAAAGATGCGCATAG
AA sequence Show only first row Show all	>Lus10015912 pacid=23143780 polypeptide=Lus10015912 locus=Lus10015912.g ID=Lus10015912.BGIv1.0 annot-version=v1.0 MRELSRFRCFPLLDIKPRSSHQPSQILAQLIKNRLTSPSLLAKLIKQYCRCSVSDTRQAHSILATFHYPNLFLFNTLIRCTHPKDSMRLFTTWISKDELA IDDLTYVYVLGSCVRSPSSSSLCLGRQIQGRVLKHGFLSNLVVSTTLIHFYGQNRDVASARKVFDEMPERSVVTWNAMITGYCSQTEKANNCAYHALALY KNMLVSDTLEKPNDTTVVCVLSSCSQLGMLEIGACFHGYLEKTICMRKMDVYIGTGLVDLYSKCGCLHSGLKIFNVMRVKNVLTWTAMATGLAIHGKGKE AMEVFDAMAGSGVKPNLVTFTSLLSACCHAGLVEEGLQLFEIMQFKFRLEPALQHYGCIVDLLGKAGYLREAYRFIKGMPVAADGVLWRSLLSASIVHGD VELGEEIWKILLQLRPETRNSSDDYVALSNIYASAERWKDVEKVRSVMKVKSIVVNQPGSSLVQSISTNNPLERCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	0	1
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10010998 [exp]	1.7	0.7763
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	4.8	0.8104
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	11.0	0.7632
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	13.1	0.7883
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	15.1	0.7667
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	17.3	0.7638
AT5G53060			RNA-binding KH domain-containi...		Lus10005915 [exp]	17.6	0.7391
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	19.3	0.7515
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	25.0	0.7216
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10037152 [exp]	27.7	0.6676

Compare expression of checked genes

Lus10015912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.