Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28830 245 / 1e-79 calcium-binding EF hand family protein (.1) AT4G38810 63 / 5e-11 Calcium-binding EF-hand family protein (.1.2) AT2G44310 50 / 2e-07 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009175 [exp] 530 / 0 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1) Lus10042380 [exp] 74 / 2e-14 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10026291 [exp] 71 / 2e-13 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 62 / 2e-10 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 58 / 3e-09 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052900 [exp] 355 / 1e-122 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.013G040500 [exp] 345 / 8e-119 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.009G127800 [exp] 67 / 2e-12 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.004G166900 [exp] 59 / 1e-09 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015916 pacid=23143802 polypeptide=Lus10015916 locus=Lus10015916.g ID=Lus10015916.BGIv1.0 annot-version=v1.0 ATGTCCGACGGAGGTCCCACCATCGTTGACGGAACCCAGCTCCGATCCCTCCACATCTCCTTCCCGGAATCCTTCGCACACCCACTTACCGGCGCACAAG TCCTCGATTTAGCCGAATCGGCCGCATCCAATTCACTCTTCCAGCTCCCATTGTCTCCCTCTCTCAAGTCATCAGCTCTTAACCGCCTCAACGTCCATGA TCCCACTGATTTCCGCCGTCAGGAGCTCACCCTCGATTCTGCCACTTCCAAACTCAATGACTACATCACTGCCCTTGCCGATCAGCTCAAAGAGAAACCG ATGGTTGTTTCGATCCTGGATGGCAGCACTCTGAGGGTGTTTCTTGACGACGAGGATGATTTCGCAATGTTAGCAGAGAATGTGTTTACTGATTTGGATG AAGAAGACAAGGGAAAGATCAAGAAGACCGAAACCAGGAATGCGCTACTCCGTATGGGAGTTGAAACTGGGATTCCTCCTTTCGAAGAGTTCCCTGTCAT TAACGACATCTTGAAGAAACATGGAGTTGAGGAAGAGGGAGAGTTGGGCCAATCCCAATTTGCTGAGTTACTTCAGCCTATTCTGCAAGAAGTTGCCGAT GCGTTGGCAAAAAACCATGTTGTTGTTGTCCACGACACTGAGATCGTCAATGGATCTAAGCTCAGAAAGGTGTTGGCTGATGAGGAGCAGTTGAAGAGCA TGATGGGGAAGATAGTGGAGCGGAAGCATGAATCAGCAGGTGAAGCAGGAAGCAAGCAAGTAATAAAGAGTTTTCTTGACAAACATGCAAAAGACCTTGG CTTGCCACCATCAGAAGCTAATGAGGCAGTGAGCCTTGTTTATGATGCAGTTTTAGATGACGTGGATGCTGGAAAGTTTGGTGATGTAGATGAAGATGAC AAGTTCACACAACTTGTTAAGGAAATACTTGACAAACTTGCGGAGCAGCTCGAGGCCAACCCAATGTACTCTTAA
AA sequence Show only first row Show all	>Lus10015916 pacid=23143802 polypeptide=Lus10015916 locus=Lus10015916.g ID=Lus10015916.BGIv1.0 annot-version=v1.0 MSDGGPTIVDGTQLRSLHISFPESFAHPLTGAQVLDLAESAASNSLFQLPLSPSLKSSALNRLNVHDPTDFRRQELTLDSATSKLNDYITALADQLKEKP MVVSILDGSTLRVFLDDEDDFAMLAENVFTDLDEEDKGKIKKTETRNALLRMGVETGIPPFEEFPVINDILKKHGVEEEGELGQSQFAELLQPILQEVAD ALAKNHVVVVHDTEIVNGSKLRKVLADEEQLKSMMGKIVERKHESAGEAGSKQVIKSFLDKHAKDLGLPPSEANEAVSLVYDAVLDDVDAGKFGDVDEDD KFTQLVKEILDKLAEQLEANPMYS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	0	1
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	2.4	0.7834
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	4.6	0.8295
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	6.9	0.7589
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	8.6	0.8023
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	9.5	0.7510
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	12.4	0.7478
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	15.2	0.7885
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	15.4	0.7107
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	15.9	0.7790
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	19.2	0.7816

Compare expression of checked genes

Lus10015916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.