Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04790 385 / 4e-136 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) AT2G01290 300 / 2e-102 RPI2 ribose-5-phosphate isomerase 2 (.1) AT1G71100 288 / 6e-98 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) AT5G44520 115 / 4e-30 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009180 [exp] 409 / 9e-146 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10036094 [exp] 296 / 8e-101 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10026777 [exp] 293 / 6e-100 AT1G71100 344 / 3e-120 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10032450 [exp] 293 / 1e-99 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10042951 [exp] 289 / 4e-98 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009181 [exp] 160 / 2e-50 AT3G04790 126 / 1e-37 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10017770 [exp] 103 / 8e-28 AT3G04790 85 / 2e-21 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10008059 [exp] 98 / 1e-23 AT5G44520 290 / 4e-98 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052000 [exp] 444 / 4e-159 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.013G039400 [exp] 438 / 1e-156 AT3G04790 379 / 2e-133 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.001G225700 [exp] 300 / 2e-102 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.010G115300 [exp] 286 / 4e-97 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.008G127600 [exp] 285 / 9e-97 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.006G039800 [exp] 134 / 9e-36 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Potri.011G155500 [exp] 118 / 2e-31 AT5G44520 294 / 7e-100 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G039700 [exp] 119 / 2e-30 AT3G04790 122 / 2e-31 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF06026 [flax] [poplar] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Lus10015919 pacid=23143770 polypeptide=Lus10015919 locus=Lus10015919.g ID=Lus10015919.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTATCCCTCATTTCCCCTGCCGCCACCTCCTCTTCTTCCGCCGCCGCCTCTTCCCTCTTCCATCCCCACCGCCCATCCTCCGTAATCCTCC CCCTCCGTAGATCTCCCAAACTCTTCTCAATCAAAGCCCAATCCGCCCCTGTTCTCACCCAAGACGATCTCAAGAAGCTCGCCGCCGACAAAGCCGTCGA TTATGTCAAATCCGGCATGGTTCTCGGCCTTGGAACCGGCTCCACCGCCGCCTTCGTTGTTTCCAAGCTCGGAGAGCTTCTCAAGTCCGGCCAGTTGAAA GATATTGTGGGAATCCCTACTTCTAAGCGAACAGAGGAGCAAGCCCGATCCCTAGGGATTCCTCTCTCTGTCCTCGACGATCACCCGAAGCTCGACCTGG CCATCGACGGAGCTGACGAGGTTGACCCAGATCTCAACCTTGTCAAAGGCCGCGGTGGGGCTTTGCTGAGGGAGAAAATGGTGGAAGCCGCTTCGGACAA GTTCGTGGTGGTGGTCGACGACACGAAGCTGGTGGACGGGCTCGGCGGGAGCAAGCTGGCAATGCCGGTGGAGGTAGTGCAATTCTGCTGGAAGTACAAT CTGGTGAGGCTAAAGGATATGTTTAAGGAAGAAGGTGTGGATGCGAAATTGAGGGTTAACGAGGATGGGAACCCCTACGTCACTGACAACTCAAACTACA TTGTAGACCTTTACTTCCAGACTCCGATCAGAGATGGGTATGCTGCCGGGAAGGAGATTCTGTCGTTTGAAGGAGTGGTGGAGCATGGGTTGTTTTTGGA TATGGCTACGGCGGTGATTATCGCAGGGAAGAGTGGCGTGGAAGTGAAAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10015919 pacid=23143770 polypeptide=Lus10015919 locus=Lus10015919.g ID=Lus10015919.BGIv1.0 annot-version=v1.0 MASLSLISPAATSSSSAAASSLFHPHRPSSVILPLRRSPKLFSIKAQSAPVLTQDDLKKLAADKAVDYVKSGMVLGLGTGSTAAFVVSKLGELLKSGQLK DIVGIPTSKRTEEQARSLGIPLSVLDDHPKLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGLGGSKLAMPVEVVQFCWKYN LVRLKDMFKEEGVDAKLRVNEDGNPYVTDNSNYIVDLYFQTPIRDGYAAGKEILSFEGVVEHGLFLDMATAVIIAGKSGVEVKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	0	1
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009180 [exp]	1.4	0.8636
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	2.0	0.8486
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	3.7	0.8573
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	7.3	0.8437
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10020696 [exp]	7.5	0.8571
AT5G20790			unknown protein		Lus10007378 [exp]	9.8	0.8271
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	11.5	0.7926
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	11.6	0.8183
AT3G43110			unknown protein		Lus10020796 [exp]	14.1	0.8320
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	14.4	0.7650

Compare expression of checked genes

Lus10015919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.