Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 364 / 2e-127 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009182 [exp] 457 / 4e-164 AT2G32080 442 / 9e-158 purin-rich alpha 1 (.1.2) Lus10001782 [exp] 396 / 9e-140 AT2G32080 425 / 4e-151 purin-rich alpha 1 (.1.2) Lus10001781 [exp] 385 / 5e-136 AT2G32080 374 / 3e-131 purin-rich alpha 1 (.1.2) Lus10020245 [exp] 335 / 5e-117 AT2G32080 327 / 6e-114 purin-rich alpha 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224000 [exp] 407 / 2e-144 AT2G32080 458 / 2e-164 purin-rich alpha 1 (.1.2) Potri.001G000700 [exp] 391 / 3e-138 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 123 / 4e-33 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF04845 [flax] [poplar] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10015921 pacid=23143773 polypeptide=Lus10015921 locus=Lus10015921.g ID=Lus10015921.BGIv1.0 annot-version=v1.0 ATGGAGGGGAATTCTGGCGGTGGGGGAAACAGTGTTGGAGGAGGGGTAGTGCCAGCACCAGCTCTGCAAGGAGCTCCCAGTGTTGCAGGTGGAGGAGGCA ACGATGTTGAGCTAATGTGCAAGACTCTTCAAGTAGAGCACAAGCTGTTCTACTTTGATCTCAAGGAGAATCCACGAGGCCGGTACTTGAAGATCTCTGA GAAGACTTCATCCACCAGGTCTACTATCATTGTTCCTTCCTCTGGGATATCCTGGTTCTTTGACCTCTTCAACTACTATGTCACTTCTGATGAGCACGAA CTCTTCAGCAAAGAATTACAGTGTTTTATTTCGACATTGGGGAAAATCGAAGAGGACGCTTCCTCAAGGGATGAAGGTTGGGCTTCTTTTAGAAACATTT TGGTTGAGATAAATGAAGCATCGAGGTTGTTTGTACTGCCCGATCAGCAACATTCTGAAACTTCGGAGCGCATTGTTGGGCTTTCAGACGACGTTGGTGC TGGCTTCATATCTGGGCATAGCAGTCAAACTGTTCCAACTTCAGAACTAAATACAGATCGAGCAGTTGAACTGCCGACACTGGATGAGATTGACAACCTG GGAGTGTCGAAGGTAATCCGAGCTGATCAAAAGAGGTTCTTCTTTGATCTTGGGAATAACAATAGAGGCCATTTCTTGAGGATATCTGAGGTAGCAGGTT CTGACAGGTCATCCATAATTCTTCCACTGTCTGGGCTGAAGCAGTTCCATGAAACAGTGGGTCACTTCGTGGAGATCACCAAAGACCGAATTGAGGGGAT GGGGAGCGCAAATGTTCGAACTATAGATCCCCCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10015921 pacid=23143773 polypeptide=Lus10015921 locus=Lus10015921.g ID=Lus10015921.BGIv1.0 annot-version=v1.0 MEGNSGGGGNSVGGGVVPAPALQGAPSVAGGGGNDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSSTRSTIIVPSSGISWFFDLFNYYVTSDEHE LFSKELQCFISTLGKIEEDASSRDEGWASFRNILVEINEASRLFVLPDQQHSETSERIVGLSDDVGAGFISGHSSQTVPTSELNTDRAVELPTLDEIDNL GVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHETVGHFVEITKDRIEGMGSANVRTIDPPQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	1.4	0.9480
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	2.4	0.9478
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	6.0	0.9334
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	6.6	0.9213
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	6.9	0.9346
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	7.1	0.9392
AT5G13500			unknown protein		Lus10036037 [exp]	7.2	0.9290
AT2G19460			Protein of unknown function (D...		Lus10008471 [exp]	10.2	0.9331
AT2G32760			unknown protein		Lus10016662 [exp]	10.6	0.9288
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	11.0	0.9297

Compare expression of checked genes

Lus10015921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.