Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17660 341 / 3e-118 tRNA (guanine-N-7) methyltransferase (.1) AT5G24840 51 / 3e-07 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026965 [exp] 52 / 1e-07 AT5G24840 412 / 2e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10020164 [exp] 49 / 9e-07 AT5G24840 412 / 1e-147 tRNA (guanine-N-7) methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070800 [exp] 378 / 9e-133 AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1) Potri.016G091800 [exp] 132 / 1e-34 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2) Potri.018G003900 [exp] 50 / 6e-07 AT5G24840 426 / 7e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.006G277100 [exp] 45 / 2e-05 AT5G24840 427 / 1e-153 tRNA (guanine-N-7) methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02390 [flax] [poplar] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015923 pacid=23143786 polypeptide=Lus10015923 locus=Lus10015923.g ID=Lus10015923.BGIv1.0 annot-version=v1.0 ATGGCTGCGGCCAAGTTAGCTCTATCGCCATCCCTATCTTCCTTTTCAAAGTACGCAGCTAATTTTCGTGGATACAGTGTGAAACTCAATGCTTGCTTTG ACGCCACCAAGCAATTGGCCAGCCCTGGCCTTGTCACTCTTGAATACGCCGACCTTAATCTCCCCTCCGCTGAAGTGGGTCATGTCAGGCTCAGGCAACA TGTGAACCCTCTAAGTTCCTCTTTCTCTGAGCCAGCACCAGTGCCTGATTGGAAGCAAGTTTTTAGGGATCCAACACTACCGCTCATGGTGGATATTGGA TGCGGGAGTGGAAGATTCCTCATATGGCTTGCGAAGAGGAATCCAGGTTCTGGAAATTACTTGGGCTTGGAAATTCGACAAAAACTGGCACAACGAGCTC AATCGTGGGTGAAAGATCTAGCACTTAGTAATGCACATTTCATATTTGCAAATGCTGCTGTATCTTTCAGCCACTTGATTGCTTCATATCCTGGACCATT AACTCTAGTTTCGATCTTGTGTCCAGACCCCCATTTCAAGAAGAGGCATCATAAGAGAAGAGTTGTCCAAAAGCCATTAGTTGACTCTATCCTTGATAAT TTAGTGCCTGGGGGCAAGGTGTTTGTGCAATCTGATGTACTTGAAGTGGCTCTTGCCATGAGAAACCAATTCGATGCAGAATCTGAAATGCTTCAACACA TAGATGAAATCGACTCGAGCCTGCAGTGCGATGAGAATGGATGGGTGGTGAACAACCCCATGGGAATACGGACTGAAAGGGAGATACATGCAGAGTCTGA AGGGGCAACAATATACAGAAGATTGTACCAAAAGAGGACAAGCTGA
AA sequence Show only first row Show all	>Lus10015923 pacid=23143786 polypeptide=Lus10015923 locus=Lus10015923.g ID=Lus10015923.BGIv1.0 annot-version=v1.0 MAAAKLALSPSLSSFSKYAANFRGYSVKLNACFDATKQLASPGLVTLEYADLNLPSAEVGHVRLRQHVNPLSSSFSEPAPVPDWKQVFRDPTLPLMVDIG CGSGRFLIWLAKRNPGSGNYLGLEIRQKLAQRAQSWVKDLALSNAHFIFANAAVSFSHLIASYPGPLTLVSILCPDPHFKKRHHKRRVVQKPLVDSILDN LVPGGKVFVQSDVLEVALAMRNQFDAESEMLQHIDEIDSSLQCDENGWVVNNPMGIRTEREIHAESEGATIYRRLYQKRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	0	1
AT4G37920			unknown protein		Lus10029560 [exp]	2.6	0.8093
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	4.5	0.7122
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	8.2	0.7138
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	8.8	0.7593
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	10.2	0.7343
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	11.0	0.7037
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041334 [exp]	20.3	0.7052
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	29.1	0.6977
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	31.2	0.7107
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	31.9	0.6805

Compare expression of checked genes

Lus10015923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.