Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28300 211 / 6e-61 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 145 / 2e-37 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 110 / 3e-25 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 105 / 1e-23 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 70 / 1e-12 Trihelix Homeodomain-like superfamily protein (.1) AT3G10000 66 / 4e-11 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G03680 64 / 2e-10 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G25990 45 / 8e-05 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 44 / 0.0002 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009184 [exp] 415 / 2e-138 AT1G76890 275 / 1e-83 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 112 / 9e-26 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 108 / 1e-24 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 107 / 1e-24 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 107 / 3e-24 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 105 / 9e-24 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 95 / 2e-20 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 94 / 2e-20 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028583 [exp] 86 / 7e-20 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039100 [exp] 161 / 1e-42 AT5G28300 292 / 3e-90 Duplicated homeodomain-like superfamily protein (.1) Potri.005G051700 [exp] 149 / 2e-38 AT5G28300 276 / 5e-84 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 130 / 1e-32 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 129 / 2e-31 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 127 / 2e-31 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 123 / 1e-29 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068400 [exp] 114 / 1e-26 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 110 / 2e-25 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 110 / 2e-25 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 100 / 5e-23 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015924 pacid=23143789 polypeptide=Lus10015924 locus=Lus10015924.g ID=Lus10015924.BGIv1.0 annot-version=v1.0 ATGTTTGAAGGAGTAGCACCACCTTCAGACCAATTCCACAAGTTCACTCCTCCTAATGCATCTCACCCATCTTCACCTTCACCCCATCTCCCTCTCCATC TCTCTTTCACTTCTTCTTCTTCTTCTCCAACCCCTCCTATCTTCCCCCTCAGCTTCGATCCGTACCATCACCAGCATCACCAGCATCAAGTACTTCCACC TGTTGAACCATCAATTTTGCTCCAACCCAATTTTTTCCACCCTTTGAGCTTCAACCCACATAGCAACAACACTGCTGGTGGTGCTACTACCAGAAGCATC GACATCAAGAACATCAACCACCATGAAGACAAAGAGCTAGTGGAAGCTGCAGCTTCCATAATCCAGCAGCAGGATCCAGCTTGGTCTAATGACGAGGTGC TCTCCCTTTTGAGGATCAGATCCAGCATGGAGCTCAACTGGTTCCCCTCTGCTGAATTCACTTGGGAACATGTTTCCAGGAGACTATCAGAGGTTGGGTT CAAGAGAAGTGCTGAGAAATGCAAAGAGAAATTTGAAGAAGAGAGCAGATATATCAACACCATCAACAACAACAACAACCATAGTAATTACCACAGAGCA GCTTTCAGCAGCCATGATGACTTGCAGAATAATAAGAAGAGGGAAAAGAGGAAGAGAGAAGGAGATAAGTTCGAGATGTTCAAAGGCTTCTGCCAAGACA TTGTGGACAAAATGATGGCTCAGCAAGAGGAGATGCAGAACAAGCTGATTGAAGACATGATTAAACGTGATCAAGAGAAGCTGGCCAGTGAAGAGGCTTG GAAGAAGCAAGAGATGGACCGGATCAACCAGGATCTCCAGCTTCGCTCCAATCAACAATCCCTCGCCGGCAACCGCCAATCCTTCATCCTCAAGTTCCTT GAAAATTTCCCCAATCCTCATCAATTAGTTGATCCTTATCATCACAGCCTCCAAAAGGTACCGATTATGGTTAACAACAACATTGGTTATCATCCAATTC CCACCTCATCATCATCCTCATCAGCAGCTTCCCAGCCAAACCCTAAACATACAGAATATCAATCTCATCCTATTCAAAAGGATGGGAATCCAGATTCAAA ATCGAACAACAATCCCCCAAATCCATCCCGAAAACCTATTGATGTGGGAGAATTGGAGAACCGGCAGAGGGAAGAAGTGGGGAAGAGGTGGCCGAGGGAT GAGGTTCTGGCGCTGATAAACTTGAGGTGCGGCATCTACAATAACTATAATAACGCCGGTGGAAGAAACGACGTCGTCGCGGCGGCGGTGGCGGAGAAGG AAGGAGGAGGAGGAGGAGGAGGATTAGCGTCGAATAGTAATAATAATAAGGCGCCGCTGTGGGAGAGGATATCGAGTGGGATGTTGGAATTAGGGTATAG GAGGAGTGCCAAGAGGTGTAAGGAGAAATGGGAGAACATCAACAAGTATTTCAGGAAGACCAAAGATCTCAACAAGAAACGCTCCTTGGATTCCAGGACC TGTCCTTATTTTCACCAGCTCAGCAGCTTGTACGGCGGAAATGCCGCCACGGAGGAACCGGGGACGGTGCCGGAAATCCTGCAGTAG
AA sequence Show only first row Show all	>Lus10015924 pacid=23143789 polypeptide=Lus10015924 locus=Lus10015924.g ID=Lus10015924.BGIv1.0 annot-version=v1.0 MFEGVAPPSDQFHKFTPPNASHPSSPSPHLPLHLSFTSSSSSPTPPIFPLSFDPYHHQHHQHQVLPPVEPSILLQPNFFHPLSFNPHSNNTAGGATTRSI DIKNINHHEDKELVEAAASIIQQQDPAWSNDEVLSLLRIRSSMELNWFPSAEFTWEHVSRRLSEVGFKRSAEKCKEKFEEESRYINTINNNNNHSNYHRA AFSSHDDLQNNKKREKRKREGDKFEMFKGFCQDIVDKMMAQQEEMQNKLIEDMIKRDQEKLASEEAWKKQEMDRINQDLQLRSNQQSLAGNRQSFILKFL ENFPNPHQLVDPYHHSLQKVPIMVNNNIGYHPIPTSSSSSSAASQPNPKHTEYQSHPIQKDGNPDSKSNNNPPNPSRKPIDVGELENRQREEVGKRWPRD EVLALINLRCGIYNNYNNAGGRNDVVAAAVAEKEGGGGGGGLASNSNNNKAPLWERISSGMLELGYRRSAKRCKEKWENINKYFRKTKDLNKKRSLDSRT CPYFHQLSSLYGGNAATEEPGTVPEILQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Lus10015924 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	2.0	0.8771
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	3.5	0.8255
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	7.6	0.8369
AT5G59845			Gibberellin-regulated family p...		Lus10001407 [exp]	10.7	0.7310
AT2G27130			Bifunctional inhibitor/lipid-t...		Lus10026768 [exp]	11.1	0.8122
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	13.3	0.7739
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	17.3	0.7982
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003565 [exp]	18.7	0.7448
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	19.9	0.8000
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	25.0	0.7483

Compare expression of checked genes

Lus10015924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.