Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50230 359 / 3e-120 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042076 [exp] 510 / 6e-179 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 492 / 2e-166 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087200 [exp] 412 / 1e-140 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08614 [flax] [poplar] ATG16 Autophagy protein 16 (ATG16)
Representative CDS sequence Show only first row Show all	>Lus10015925 pacid=23143771 polypeptide=Lus10015925 locus=Lus10015925.g ID=Lus10015925.BGIv1.0 annot-version=v1.0 ATGCATAGACCAATGAGCTCCGCAAGCTCTAAAAAGGTTAGAGTTCCTCCAAATTCATCAACTCCTCCTCCTACATCGAGTAGTAATGCAGGAGTTGCTC CTACTCCTAATACTACTCCACGAGCTGCTGTCATTCCTAATACTACTCCACCAGCTGATGTTACTCGTAATACTACTCCACAAGATGCTCCTGCTCCTAT TACTACCCAGCTAGCTCCTCGTTCACAAGAGGATACACCTCCGACTCGTGTAGAAATCGAATCTCTAGATCTTAGTCCACCACAAGATGAAGGTGGACAG TCCTCTTCTGTTTCTACAACTACTTGTCCTTTAGTTCAACAGTTTGTCAAGAACACTATAGCTGCTGCTCAAGGGATTCAACAGTCATTGGATCAGATTT CGAGGGAAGCTATCAAACACACGATGAAGGCTCTGAGGAAGCAACATTTGCTTGAAGAAGCTGCACATGCTCCTTCTTATGCGGCTCTTTTTAGGCCATT TGGCTCAGAATCGAAGGAGAAAGCAGAGAACTTGGAGTCTGAGCTTCAGCAATGCTACAAAGCTCAATCTCGATTGTCTGAGCAACTTGTAGTTGAAGTA GCTGAGGCCAGAACAGCAAAAGCTTCAGTTCAAGAGAAAGAAGCAACTATTGCCGATCTGCAGAAGGAATTGACTGAATTAAGGGATGAATGCTCTCAAC TAAAGAATGACTTGATAGAGAAGATCAAAGGACTAGAACTAATAGTAAGCGAAAATCAAGAGCTGAGAAACCAATTGACAGAGATGACTACCAAGGCTAA CAATGCTGAGACAGAGAATAAGATGCTGGTTGCTCGTTGGATGTTGCAAAAGATGCAAGATGCTGAGCGCCTCAATGAGGTGAATGCACTTTATGAAGAG ATGGCCGATCGGCTAAAGGCAAGCGGCCAAGAGAAGCTTGCTCGGCAACTGGTGGATGGAGTGGTTCGTCGAAGCGAGGAAGGAGCCGAGTATTTCGTCG AATCCACCATTCATTCTTCGTGCAAACACAAGATCACAGCTCATAACGATGGCTGCGGAGCGCCAACTCGAACTCTACAGGGCTGCCTGGGATCGGTTCT CGATTTTTTAATCACACACGACAATAAATCAGTGAGTGCAGCTAGCAGCTCCAACAACCTATTCGTCTGGGACGTAACCTCGGGTCGACAGCGTCACACT TTGACAGGCCACGTGGACAAAGTCTGTGCCGTGGACGTCAGCAAAGTCTGGAGCCGCCATCTTACGACCGTACGATCAAAGTGTGGGATCTGA
AA sequence Show only first row Show all	>Lus10015925 pacid=23143771 polypeptide=Lus10015925 locus=Lus10015925.g ID=Lus10015925.BGIv1.0 annot-version=v1.0 MHRPMSSASSKKVRVPPNSSTPPPTSSSNAGVAPTPNTTPRAAVIPNTTPPADVTRNTTPQDAPAPITTQLAPRSQEDTPPTRVEIESLDLSPPQDEGGQ SSSVSTTTCPLVQQFVKNTIAAAQGIQQSLDQISREAIKHTMKALRKQHLLEEAAHAPSYAALFRPFGSESKEKAENLESELQQCYKAQSRLSEQLVVEV AEARTAKASVQEKEATIADLQKELTELRDECSQLKNDLIEKIKGLELIVSENQELRNQLTEMTTKANNAETENKMLVARWMLQKMQDAERLNEVNALYEE MADRLKASGQEKLARQLVDGVVRRSEEGAEYFVESTIHSSCKHKITAHNDGCGAPTRTLQGCLGSVLDFLITHDNKSVSAASSSNNLFVWDVTSGRQRHT LTGHVDKVCAVDVSKVWSRHLTTVRSKCGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	0	1
					Lus10014719 [exp]	1.7	0.9833
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	3.7	0.9767
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	4.6	0.9764
AT1G15260			unknown protein		Lus10035880 [exp]	4.9	0.9679
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	5.8	0.9167
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	5.9	0.9674
					Lus10024084 [exp]	8.4	0.9607
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	8.8	0.9570
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	9.0	0.9585
					Lus10010481 [exp]	9.5	0.9609

Compare expression of checked genes

Lus10015925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.