Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 633 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 610 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 592 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 500 / 6e-172 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G20860 369 / 1e-122 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 384 / 3e-122 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G12200 268 / 6e-82 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G69220 130 / 2e-31 SIK1 Protein kinase superfamily protein (.1.2) AT1G50240 129 / 8e-31 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT4G29810 122 / 4e-30 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009186 [exp] 1125 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 798 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 794 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 584 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10000148 [exp] 409 / 7e-141 AT1G54510 97 / 7e-23 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 374 / 5e-118 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 372 / 2e-117 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 354 / 4e-114 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 349 / 9e-109 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051600 [exp] 815 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 814 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 675 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.016G051900 [exp] 377 / 9e-123 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 376 / 3e-122 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 383 / 1e-121 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 380 / 2e-120 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 362 / 7e-118 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 355 / 1e-115 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 125 / 2e-29 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015928 pacid=23143800 polypeptide=Lus10015928 locus=Lus10015928.g ID=Lus10015928.BGIv1.0 annot-version=v1.0 ATGGACCAGTACGAAGTACTTGAACAAATCGGAAAGGGGTCATTCGGCTCTGCTCTTCTTGTGAGACACAAGCATGAAAAGAAGAAGTATGTGTTGAAAA AGATCCGCCTCGCCCGTCAAACTGATAGGTCACGTCGATCAGCTCATCAGGAGATGGAGCTGATTTCTAGAATACGAAATCCTTTCATTGTAGAGTACAA AGATTCCTGGGTTGAAAAGGGTTGCTATGTATGCATAATCATAGGGTATTGTGAAGGAGGAGACATGGCGGATGCTATAAAGAAAACCAATGGTGTGCTT TTCTCTGAAGAGAAGCTATGCAAGTGGGTTGTCCAACTTCTCATGGCACTTGACTACTTACACATGAATCATATTCTTCATCGTGATGTGAAGTGTTCCA ACATATTCTTGACAAAAGGCCAAGACATTCGTCTTGGTGATTTTGGACTCGCCAAAATTTTGACCTCTGATGACCTAGCTTCGTCAGTTGTGGGAACTCC AAGTTACATGTGCCCGGAGCTTCTTGCTGACATACCTTATGGTTCAAAATCAGATATTTGGTCTTTAGGCAAGCAGACTGATATGCAAGCTCTGATTAAC AAAATAAATAGATCCATAGTGTCTCCACTCCCAACTAAATATTCTGGTGCTTTTCGAAGTCTTGTGAAAAGCATGCTGCGGAAGAATCCAGAACTGAGGC CAACGGCTGCGGAGCTGCTCAGGCATCCTCATCTGCGACCTTATGTTCATAAGATACATGTCAAGATCAATAGCCCAAGAGGAGATACATTACCATACCA ATGGCCCGACAACAACTATATGAAAACGAGGTTTTTGGATACAGTAATGGCTCCAAGCACCTACTCAGAGAAGAAGCGGGATTCGTTCTGCAATAGGATG TTAAATCCAAGCATATCTGCCACAGAACAAGACTCTATCTGCTCCACCAAAGCGATGCATCATGATACAGTGAGTTACATGAACCGCAGGATGTCCGACA TCTCTCTCGGTAGCAGTCGTGCAACTGTGATCTGTAAGTCCATCGCTTCGAAACCTTCAAATATCACCACAACTCGGAAAGGTGGTTCTTCCAGAGCTTC TCCTGTTCTTAAGAGACAGCCAGACCCCGTGAGGAAGCGCGAATCTTTTCCAGCCACTTCTACCCAGACCAAAAGGTCTGTTATTACAAGCCGAAGAGCA TCTCTTCCTATGGCGACAAAAGCTACAAGACAAAGCCCTGCTTGCCGTCCAAGTGTTGGCATCCTCCAGAGCTTGAAGTCCCCAGACGTCTCTGTCAATG CTCCTCGAATTGACAGGATAGCTGAATTTCCGTTACCTTCATACGAAGAGACATTCTTCCCCGTCCACAGAACTTCACCAACTTCGGCGCAAGGATCCTC GGCTTCGCCTCGACATGCAGACTGCTCGATCACCATGGACAAATGCACTATTCAGACACACGACACCAACTACTCTGCCAAGCCATTAGGTGGTGTTGCG GATGCATGGCAAGGTATAAACTTCAGCATATTCAAGCAAGTAGAAGAAGAGAACGGAAGCAACTCCTCCAACCAAAATGCAACTGGTGGAGCCTCGAGCC GGACCACCTCCTCAGACACAAGGCGCCGTAGGTTTGACACGTCTTCATACCGGCAGCGTGCGGATGCTTTGGAGGGATTGCTGGAGTTCAGTGCGAGGCT GCTGATCGACGAGAGGTATGATGAACTTGGGGTGTTACTGAAGCCATTTGGGCCTGGGAAAGTTTCGCCAAGAGAAACTGCAATCTGGCTGACCAAAAGC ATAAAAGAGAATACCACAAAAGGAGAAGATCAATGA
AA sequence Show only first row Show all	>Lus10015928 pacid=23143800 polypeptide=Lus10015928 locus=Lus10015928.g ID=Lus10015928.BGIv1.0 annot-version=v1.0 MDQYEVLEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRSRRSAHQEMELISRIRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMADAIKKTNGVL FSEEKLCKWVVQLLMALDYLHMNHILHRDVKCSNIFLTKGQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGKQTDMQALIN KINRSIVSPLPTKYSGAFRSLVKSMLRKNPELRPTAAELLRHPHLRPYVHKIHVKINSPRGDTLPYQWPDNNYMKTRFLDTVMAPSTYSEKKRDSFCNRM LNPSISATEQDSICSTKAMHHDTVSYMNRRMSDISLGSSRATVICKSIASKPSNITTTRKGGSSRASPVLKRQPDPVRKRESFPATSTQTKRSVITSRRA SLPMATKATRQSPACRPSVGILQSLKSPDVSVNAPRIDRIAEFPLPSYEETFFPVHRTSPTSAQGSSASPRHADCSITMDKCTIQTHDTNYSAKPLGGVA DAWQGINFSIFKQVEEENGSNSSNQNATGGASSRTTSSDTRRRRFDTSSYRQRADALEGLLEFSARLLIDERYDELGVLLKPFGPGKVSPRETAIWLTKS IKENTTKGEDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	0	1
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	1.0	0.9394
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	1.7	0.9047
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	3.2	0.9060
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	5.3	0.8922
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	5.5	0.9020
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	11.5	0.8979
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	12.4	0.8936
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	15.5	0.8971
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	17.3	0.8921
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	19.0	0.8866

Compare expression of checked genes

Lus10015928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.