Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032813 [exp] 163 / 1e-46 ND / Lus10015951 [exp] 152 / 1e-44 ND / Lus10012088 [exp] 146 / 2e-41 ND / Lus10010834 [exp] 113 / 4e-29 ND / Lus10010812 [exp] 84 / 1e-18 ND / Lus10011610 [exp] 59 / 2e-10 ND / Lus10023587 [exp] 48 / 5e-07 ND / Lus10010872 [exp] 47 / 2e-06 ND / Lus10029526 [exp] 47 / 7e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015929 pacid=23143793 polypeptide=Lus10015929 locus=Lus10015929.g ID=Lus10015929.BGIv1.0 annot-version=v1.0 ATGGATACCCTAGGAACTGAGGGTATGGCTCGTAATCCGGCCACTATGGTGGTGGTGGATAAGCTGGCCATGGAGCGAAGTCCTCGCACCTTGCCCTCAA TCCTCTCTGCCCCCCTCGCTCACCTCTGGTACCTGATCCACAGTAGTAGCCATCAGATTGGGAACCCCATGCTCCCGGAGAGTCCAAACTGTGATGGGAA ACTTGCGCTGAAACAACGGGTCCGCCCCAAAAGCATCCATCACTCCAAGCCTTCGCACCAGCCGTGCGATGAAACTCCCTCCAAACAGAACTCCAACCCC TCTTTGCTCAAGGATGTGCCTGAACATTCCGATCACCAAATCCTCAAGATGGACCTTCACTCCATTTTCGAGTTAGTAAAACAGTTACATATTTGTGGAG TTCACTACTCCTCCGCTACTGGCCTGCTTCCTAGCAGTGATGGTGCGTCGAAAGAGCAAGTGAAGAAGCCTCATCCTCGGTATCTTAAGGCATCTTGCCT TCGAGGATCGAGCAGAATACGGAGAAGAATCCAATGCAATATCCTTCTAGAACTCCCTCAGTTCATCCGCCAAAAAGGAAAACAGTCAACGGCCAAGCCG AAATTTGATGCCACCCGCCTCTTAGGTAGAGGGGTATCTCGCTATCTTCACTGTGGAGTAGAACTCCCTTGTTGCATGCGGGAGCTCTTGATCATCAAGC CGTACCAGTGGCCAAATACATGCTCTCTCATAGTACACCATCAACCATGTGCTCCAACCTTCCTCCACGAAGCTCTGAAAGTCAAGGTACCCCTACGATG CAACCGCCCAAGTCCGATACACTCTGTATCAGCGGGCGAACTCATCCCTAGATCAAATTTGAAGATTGTCTACTCCACATATGGGGTTGGTAAAGCGGTA GTAGCGGCTGGAATGGGATCTGATGGTGTCTCCCGTGGAGCAACTGTTGCAGCTCGCTGCAGATGGCGAGGATTAGAAGAAGATGAAGCTATAGCCTCCT TTGGACGGCTAGAAGCAGTAGCTCGTGATGGAGATGAAGGTGGAGTAGTCCCTGTAGAAGAAGGCTCTGAAGAATAG
AA sequence Show only first row Show all	>Lus10015929 pacid=23143793 polypeptide=Lus10015929 locus=Lus10015929.g ID=Lus10015929.BGIv1.0 annot-version=v1.0 MDTLGTEGMARNPATMVVVDKLAMERSPRTLPSILSAPLAHLWYLIHSSSHQIGNPMLPESPNCDGKLALKQRVRPKSIHHSKPSHQPCDETPSKQNSNP SLLKDVPEHSDHQILKMDLHSIFELVKQLHICGVHYSSATGLLPSSDGASKEQVKKPHPRYLKASCLRGSSRIRRRIQCNILLELPQFIRQKGKQSTAKP KFDATRLLGRGVSRYLHCGVELPCCMRELLIIKPYQWPNTCSLIVHHQPCAPTFLHEALKVKVPLRCNRPSPIHSVSAGELIPRSNLKIVYSTYGVGKAV VAAGMGSDGVSRGATVAARCRWRGLEEDEAIASFGRLEAVARDGDEGGVVPVEEGSEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015929 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	3.9	1.0000
					Lus10003843 [exp]	6.9	1.0000
					Lus10001326 [exp]	8.5	1.0000
					Lus10033373 [exp]	8.9	1.0000
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10038850 [exp]	9.2	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	10.2	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	10.6	1.0000
					Lus10027374 [exp]	10.7	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	11.8	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	12.4	1.0000

Compare expression of checked genes

Lus10015929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.