Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 58 / 6e-09 IQD19 IQ-domain 19 (.1) AT4G23060 43 / 0.0003 IQD22 IQ-domain 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009187 [exp] 433 / 2e-150 AT4G14750 114 / 8e-28 IQ-domain 19 (.1) Lus10021904 [exp] 53 / 2e-07 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 50 / 3e-06 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10041188 [exp] 46 / 4e-05 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10005760 [exp] 42 / 0.0007 AT5G07240 219 / 3e-67 IQ-domain 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038901 [exp] 70 / 6e-13 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.005G051500 [exp] 57 / 8e-09 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.008G156700 [exp] 54 / 1e-07 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 50 / 3e-06 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.001G190500 [exp] 44 / 0.0002 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.003G047800 [exp] 43 / 0.0003 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.012G139800 [exp] 42 / 0.0007 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 42 / 0.0008 AT5G07240 138 / 3e-36 IQ-domain 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10015930 pacid=23143791 polypeptide=Lus10015930 locus=Lus10015930.g ID=Lus10015930.BGIv1.0 annot-version=v1.0 ATGAATTTCCTACTGGGGAAGAAGGAGAGCAAGAAGGGGAGGAAAATTGCAGACCCAAACGGAATCTCAATTTCCAAAGAAGATTTCAGTATTGAAGTAG CAAGTCATCAACCTCCAACTCCATCCAACGGCCACAAGAGGAGATGGAGTTTTGGCAAGTCATCAAGCAAAGACATTTCTTCTTCTTCTGAGAGGCATAA TAGCAGCAGCAGCTTCAACCCTCTTTACCACACCTCGTCGGAAGCCATCTCTCAGTTCGTCAAGGCTTTGTCTGTTGGGAGCGGTAGTGATGCTGTAGCA TTGGCTTTGCATGAATCTGCTGCTAGCATTATCAGGTTTTCCCATCCTTCATCGACCCTAGCTACAGATAGACGACTGATCAAGATTGTCTCTGTTGAAC ATGCTGCTGCCACCAGGATCCAATCCGTCTTTCGTTCATACCTGGCAAAGAAAGCATTGGGTGCACTAAAGGGATTGGTGAAGTTGCAAGCAGTGGCTAG AGGGCATTTGGTGAGGAAACACATGAGTGCCACTATAAGGAAGATGCATGCTGTTATGTCTATTCAAGATACTTATAAAGAGAAGTTAAACAATACAGAT AGAAATTCAAGGGAAGTGGTGGTAGTTAGCAGACGCTATTCAGGGGAGCAAGAAGAACAGCGCTCATATGACGAATCCTCTTATTACAAAGCTCCACAGA GAAGAGCCTCTTTCACTAACCACCAACCAAAGTATCCCAAGCATCAGGATTTATCATCCCCGGAGCCCAACTACATGTCGAAAACACAGTCATCCATGGC TAAAACCAGGTCTCGCAGTGAGCCCAAACAGAGACCTCGAAGGAGCATTTCGTCCAACTCCATCGTCACCAGGGCATCCCCAACCAGTGATGAAACAACA AATAGTGTACAGGATGAGAGTCGGAGTATGCAATTCCCGTCATCGACTTCACAATCGGGCAGGGTATCCTCCTCCCACGAACAATGGTTCGTCAAGCCCA ACTACATGTCGAAAACACAGTCATCCATGGCTAAAACCAGGTCTCGCAGTGAGCCCAAACAGAGACCTCGAAGGAGCATTTCGTCCAACTCCATCGTCAC CAGGGCATCCCCAACCAGTGATGAAACAACAAATAGTGTACAGGATGAGAGTCAGAGTATGCAATTCCCGTCATCGACTTCACAATCGGACAGGGTATCC TCCTCCCACGAACAATGGTTCGTCAAGCTCTACCGACCCCGTCACTCCTGGATGCAGACTATTATCCCATAG
AA sequence Show only first row Show all	>Lus10015930 pacid=23143791 polypeptide=Lus10015930 locus=Lus10015930.g ID=Lus10015930.BGIv1.0 annot-version=v1.0 MNFLLGKKESKKGRKIADPNGISISKEDFSIEVASHQPPTPSNGHKRRWSFGKSSSKDISSSSERHNSSSSFNPLYHTSSEAISQFVKALSVGSGSDAVA LALHESAASIIRFSHPSSTLATDRRLIKIVSVEHAAATRIQSVFRSYLAKKALGALKGLVKLQAVARGHLVRKHMSATIRKMHAVMSIQDTYKEKLNNTD RNSREVVVVSRRYSGEQEEQRSYDESSYYKAPQRRASFTNHQPKYPKHQDLSSPEPNYMSKTQSSMAKTRSRSEPKQRPRRSISSNSIVTRASPTSDETT NSVQDESRSMQFPSSTSQSGRVSSSHEQWFVKPNYMSKTQSSMAKTRSRSEPKQRPRRSISSNSIVTRASPTSDETTNSVQDESQSMQFPSSTSQSDRVS SSHEQWFVKLYRPRHSWMQTIIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	1.0	0.8603
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	4.0	0.8489
AT1G69630			F-box/RNI-like superfamily pro...		Lus10032432 [exp]	6.6	0.8082
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	7.2	0.7772
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	8.5	0.8324
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	11.8	0.8024
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	12.0	0.8377
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	13.2	0.7728
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	13.2	0.8220
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	13.9	0.8171

Compare expression of checked genes

Lus10015930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.