Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04820 853 / 0 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009188 [exp] 1278 / 0 AT3G04820 892 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051400 [exp] 878 / 0 AT3G04820 914 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01142 [flax] [poplar] TruD tRNA pseudouridine synthase D (TruD)
Representative CDS sequence Show only first row Show all	>Lus10015931 pacid=23143767 polypeptide=Lus10015931 locus=Lus10015931.g ID=Lus10015931.BGIv1.0 annot-version=v1.0 ATGTGGCAATGGAATCTTCCTTCTTCCGCTGTAGTAACCGTCGCTGCTCGTTGCTTCTTTTCTTCGTCGGCGGCGGCTCTAAAACCCTACCACTTTTTCT CCTCCCTCGGAAGCTCAAAACTTATTCGTAGCCTCGTCACTGTTCCCACTTCGATATCTCTGATGTCTACAATAGACGAAGCCGACGTCGGAATCCTCTG CTACATCTCTCAAACCCCCGGCTTCCGTGGTATTCTCAAGCAAAGGTACTCTGATTTCATTGTGAATGAAGTAGATACGGAAGGAAATGTGGTTCATTTG ACCACTTTGAATGCGCCGTCTCAAGAGGTTGTGGAGGAGAGTGAGACGAAGAAGTGTGATGAAGTAATCCAAGAGAGTTATGTGTCTGAAATTCAGGCGT TTCGGTTACTTACCGGTGACTCTGATGCTGATCTTTTGGAAGGTTTGATCAATCAAGTGAATTCTGGAAGCGAAGATGGAATTTCACCGATAGTGCTCTC TGCGGATTATGATAAAGCACATCGAACGGCAGTGCATAATTTCTTCAAGGAGAAACTGAAGTTTCTTGTCACGGATACTGTTGATGGGCTGGATGCTTCC TCGAAATGCATTCGTGTTAGATTGAATGGGGGCCATGGCAATGATGGAAGAAGTTCAAGGAAACGCAAAGATAGAGGTGGCAAGGCCTTTGACAGTAGAG GTTCCAATAATTGGCCAGACCATCTCGGAAAATTCCTAAGGTTTCATCTGTACAAGGAGAACAAGGATACACAGGAAGCCATAGGTCTCATAGGGAAGAT GCTTGGTGTTCGGCCGAGGGCATTCGGGTTTTCAGGCACAAAAGATAAACGCTCTATCTCAACTCAAAGGGCTACCATCTTCAAGCAACAGGCGAGTAAA GTAGCTGCCCTTAATGACCGGTTGATTGGTATTAAAGTCGGTGACTTTTGCCATGTTAATGAAGAACTTCTTCTTGGGCAGCTCTTAGGCAACAGATTCA CAATCACTTTAAGAGGAGTTGTTGCAGACTCTGAAGGGACCATCAAAGAGTCTGCTGAGTCTTTGGGAAGGCATGGGTTCATCAACTATTTCGGTCTGCA GCGTTTTGGAAGTGGTTCTGTGGCAACGCATCTTGTTGGGGCAGCATTGCTTCGTGGAGAGTGGAAAAGTGCTGTAAGCATGCTTCTTGATCCAAGAGAA GGGGATATCCTTTTCTTATCTCTGGAAAATTATTCTCTTTTGAAAGATGCAGTAAGGAAGGCAAGGGAATATTACAAGGAAACGAATGACATTGATGGAA CCTTGAGGCAATTGCCACGGTATCTGACAGCTGAGAGAGCTGTTCTTCAGTGTTTGAAAAAATGTCCTGGAAATCACTTACAAGCCCTGAAAGCTATACC AAGGACTATGAGAATGATGTATGTACACAGTTACCAGAGCTATTTGTGGAACCATGCAGCAAGCATGAGATTCCAGAAATATGGAACACAAGTTGTTTTG GGAGACTTAGTATACCCTAAAGATGATGTAACAGAAAGGGAAACTGTGATTGACACATCTGAAATCGAGGTTGTAACTGAAGATGTTGATAATTGCAGTT ATTTAGATGAAGCTTCAGTGGCAGAGCTTCCAGAGAAAAAGAAACTCTTTGTTAAGGCCGTTACCGCAGAAGACATCTCTGCTGAGAATTATGCTATTGA TGACATTGTCCTTCCAATGCCTGGGTCTAGAACGATTTTCCCGGCCAATGACATTTCGGAAGTCTACCACGATTTGGCGAAGAAGGATGCCATCAGTTTA ACTGAAAGTGTGCACAACGCCAAGGAATTCTCGATAACCAGCATGACAGGGAGTTATAGGCAAGTCTTTCAGAAGCCAAGGGACTTCGAGTGGAAGTTGC TGACGTATACTGATTGCAATGCCCCGTTAGCAGAGACAGATATGGATAGGATTCTGAAGGATAAGGCTTTATGTAAAAGTGATATCAAATTGGAAGATGG ACCGTGCTTTGAAAATGGTGGTGAAGTTGACAGGAGTGAAGCAGAGCCAGTGAAATCGGAACCACCCCATTGCAACCCGGATTTGCTGGAAAAGCAATTA GCTCTCAAGTTGAGCTTCACTCTTCCAGCTTCATGTTATGCCACAATGGCCATACGAGAGTTGCTTAAAACATCAACATCAGAAGTTGAGAGGAATTGTA GATGGAAAGTTGAACTAGGATGCAGACCGGATGAAAATATTTAA
AA sequence Show only first row Show all	>Lus10015931 pacid=23143767 polypeptide=Lus10015931 locus=Lus10015931.g ID=Lus10015931.BGIv1.0 annot-version=v1.0 MWQWNLPSSAVVTVAARCFFSSSAAALKPYHFFSSLGSSKLIRSLVTVPTSISLMSTIDEADVGILCYISQTPGFRGILKQRYSDFIVNEVDTEGNVVHL TTLNAPSQEVVEESETKKCDEVIQESYVSEIQAFRLLTGDSDADLLEGLINQVNSGSEDGISPIVLSADYDKAHRTAVHNFFKEKLKFLVTDTVDGLDAS SKCIRVRLNGGHGNDGRSSRKRKDRGGKAFDSRGSNNWPDHLGKFLRFHLYKENKDTQEAIGLIGKMLGVRPRAFGFSGTKDKRSISTQRATIFKQQASK VAALNDRLIGIKVGDFCHVNEELLLGQLLGNRFTITLRGVVADSEGTIKESAESLGRHGFINYFGLQRFGSGSVATHLVGAALLRGEWKSAVSMLLDPRE GDILFLSLENYSLLKDAVRKAREYYKETNDIDGTLRQLPRYLTAERAVLQCLKKCPGNHLQALKAIPRTMRMMYVHSYQSYLWNHAASMRFQKYGTQVVL GDLVYPKDDVTERETVIDTSEIEVVTEDVDNCSYLDEASVAELPEKKKLFVKAVTAEDISAENYAIDDIVLPMPGSRTIFPANDISEVYHDLAKKDAISL TESVHNAKEFSITSMTGSYRQVFQKPRDFEWKLLTYTDCNAPLAETDMDRILKDKALCKSDIKLEDGPCFENGGEVDRSEAEPVKSEPPHCNPDLLEKQL ALKLSFTLPASCYATMAIRELLKTSTSEVERNCRWKVELGCRPDENI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	0	1
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	1.4	0.8936
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	2.4	0.8667
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	3.2	0.8905
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	4.1	0.8355
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	4.9	0.8547
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	5.5	0.8672
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	5.7	0.8764
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	5.9	0.8594
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	6.2	0.8904
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	11.5	0.8346

Compare expression of checked genes

Lus10015931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.