Gene [FLAX] | FIBexDB

Lus10015932 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT2G05642	52 / 3e-07			Nucleic acid-binding, OB-fold-like protein (.1)
AT2G06510	41 / 0.001		ATRPA70A, ATRPA1A	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10017778 [exp]	472 / 8e-166	AT5G08020	75 / 3e-14	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10018804 [exp]	449 / 8e-155	AT1G75050	171 / 4e-71	Pathogenesis-related thaumatin superfamily protein (.1)
Lus10004507 [exp]	64 / 2e-12	ND	/
Lus10012660 [exp]	67 / 3e-12	ND	169 / 1e-48
Lus10036312 [exp]	54 / 2e-07	AT5G08020	67 / 3e-11	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10034056 [exp]	47 / 1e-05	AT4G19130	47 / 4e-05	Replication factor-A protein 1-related (.1)
Lus10033435 [exp]	43 / 0.0002	AT2G06510	426 / 4e-147	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Lus10015079 [exp]	39 / 0.0004	AT3G01650	52 / 3e-09	RING domain ligase1 (.1)
Lus10003268 [exp]	42 / 0.0007	AT5G08020	282 / 2e-89	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0021 [flax] [poplar]	OB	PF08646 [flax] [poplar]	Rep_fac-A_C	Replication factor-A C terminal domain

Representative CDS sequence

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>Lus10015932 pacid=23143797 polypeptide=Lus10015932 locus=Lus10015932.g ID=Lus10015932.BGIv1.0 annot-version=v1.0

ATGCATAGAGATCTCATTCTTATTGATGAGAAGGGTGACGACATTTGGGTTCAGATTCCTCACCGTCTTATGCATAATTTCTCACACCTCCTGACTGATC

AGAAGGTGTATAATGTCGCTAATGCTAAAGTCATCAAACGTCAAAGAAATTCCGTCCAATTTCAAATCGCGAAAGATTGTCTCTCAACTTGTGGAGCAAC

ACAAATTCTACCAAATCTCAAAATCTCTGAAGTTCTAGAATTTATTACAAGGGCAAATGATGACAAGCTGGATGCTGTTTTACCAGTTTACTCAGATCCA

AGTGACATTGGAAATAGTGATTCGGTAACCTTGGAAATGTTGAATTCAGCAATATTGGAGGTAGACAACCAAGAGAAGTATTTTATTGTGTATTGTATGA

TAAAAAGCATTAAAGATGTCTGGTGCTATACTGGATGCGAAGTTTGTTCCAAGAAAGTTGAAGATGATGTCTCTGATTACTTCTGTTGTAAACTACTTAG

GAAGGATGCAACGAAACGATTTCGTGTTCAAATTGAAGTTGCAGACAATACAGGTGAGGCAGATCTCATTCTTCTTGACTGTTTTGGTCAAGAACTTCTT

GGGACAACAGCCAACAGGCTATATGAACTGAACCGTAAAGACAGTAGAATTCCACCTGATCAGATAACAATTTTTGTTGGCAACAACATAAAAGCACAAG

TTCAGGTAAACGCGTACAATATACGGACGGCAAGAAATGAATTTACAATCACCAAGATTCTAGCATCACCAATTGTTCAGACTCCTTCGACTCCCCAGGA

AAAGGTTCCAGCTTTTGGTACAGGAGATGATTCAGATCAGCAGTCCATTAAGAGTTGTATTTCTGGACAATCGTCGATTGAGAAATCTGCTGAAGTTGTA

GCAAGTTCTACCAAGAACAACGAAGTAGCTGCTATAAATTTGGATGAAGCTCTTGAAGACGACCTTTTGGATGAAAATGATCCCTCTGCCACCATCAATA

AAGACCGTAAAAGAAAAATGGTTTGCGTAGATTCTGATGATGATTAG

AA sequence

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>Lus10015932 pacid=23143797 polypeptide=Lus10015932 locus=Lus10015932.g ID=Lus10015932.BGIv1.0 annot-version=v1.0

MHRDLILIDEKGDDIWVQIPHRLMHNFSHLLTDQKVYNVANAKVIKRQRNSVQFQIAKDCLSTCGATQILPNLKISEVLEFITRANDDKLDAVLPVYSDP

SDIGNSDSVTLEMLNSAILEVDNQEKYFIVYCMIKSIKDVWCYTGCEVCSKKVEDDVSDYFCCKLLRKDATKRFRVQIEVADNTGEADLILLDCFGQELL

GTTANRLYELNRKDSRIPPDQITIFVGNNIKAQVQVNAYNIRTARNEFTITKILASPIVQTPSTPQEKVPAFGTGDDSDQQSIKSCISGQSSIEKSAEVV

ASSTKNNEVAAINLDEALEDDLLDENDPSATINKDRKRKMVCVDSDDD

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05642			Nucleic acid-binding, OB-fold-...		Lus10015932 [exp]	0	1

Lus10015932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.