Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 307 / 4e-100 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033851 [exp] 624 / 0 AT5G61820 316 / 6e-103 unknown protein Lus10004249 [exp] 329 / 3e-109 AT5G61820 435 / 2e-150 unknown protein Lus10017316 [exp] 322 / 3e-106 AT5G61820 436 / 1e-150 unknown protein Lus10003210 [exp] 318 / 6e-105 AT5G61820 431 / 1e-148 unknown protein Lus10042158 [exp] 312 / 2e-102 AT5G61820 415 / 1e-142 unknown protein Lus10017315 [exp] 113 / 6e-30 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108500 [exp] 389 / 4e-132 AT5G61820 470 / 2e-163 unknown protein Potri.015G108600 [exp] 382 / 1e-129 AT5G61820 477 / 3e-166 unknown protein Potri.015G108700 [exp] 380 / 6e-129 AT5G61820 453 / 5e-157 unknown protein Potri.015G108800 [exp] 375 / 5e-127 AT5G61820 468 / 7e-163 unknown protein Potri.012G110300 [exp] 289 / 5e-95 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 145 / 3e-41 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10015933 pacid=23143795 polypeptide=Lus10015933 locus=Lus10015933.g ID=Lus10015933.BGIv1.0 annot-version=v1.0 ATGACTCCAGGAGAAGTAGTCTTCGAATACTACTACGGCGTGGACTTCCCCAAGGGCCACCTGGCTCTCAAGAGCTTCCATGCTGACGTGGTCGACGAGG ATGACAACGTCATCCCTTACCACGAAGTCTACCTCCACCATTCCTACATCGTAAGCTACTACCAAGCCAGGAACTACTCCATCCCTCCGGTAAAGGACAT AGAGACCCTCCCTTACGGCGACGGATTCATCTACCGTCGCAACCACGGCATCTGCCAGGGCGACATCCTCGGCCAGTACTTCGGCCTCGGGACCGAGATG CAGACCACCCCGACCAACGTCCCCGATCCCTACGGGATAGAGATCGGCGATCCGGCCCAGATCCCCGACGATGGGTTTGAGGAGAAGTGGCTGCTGGTTG TCCACGTCATAGATACACGTGGCGCGGTCGACAGGCTGGGTTGCGTGGAGTGCAGGAGGGATCTGTACAATGTGACGGTGGATCAGTTCGGGGAGCCGTT GAAACCTGATTACCACGGTGGACTGTCCTGTTGCTACGCTCACACCAAGTGCAAAGTTAGAGATGACTACCATGGCCCGACAAGGAGCCTTAGGATGCGG TACAAGTTGACCTGGACCGACTGGATCCCATCCGTTATTGTTCCCGTCCGAATTTACATCCTTGATATCACTGATGATATGAAGCTCCATGTTGATCCGT CTAACGGAGCCGTTACCGCACACCACGACTGCCGGATAGAGTATGATGTTGAGAGGTGCAACAGCGGGAATGGAGAGAAATGTGTAGACGTGAAGAAATC AATAGCGGCAATGCCCAAGGGTGGAAACGTACTCTTTGGTCTTACCCACTTGCATTCTGGTGCTATAAATTCCACCTTATATGGACAGGACGGACGAGTG TTATGTAAAACGGAGCCGATCTACGGAGAAGGAAAGGAGAAAGAATACGTGGTTGGGATGACAACATGTTACCCTGAGCCGGGAAGCGTAGTTATTAATG ACGGGGAACTTCTTGTTCACGAATCAGTGTACATAGCTGACCGCCGACGCACCGGAGTTATGGGGCTTTTCTATCTCATCGTGGCTGACCAACAACATGA TGACAACACTACTGCTAGTGCTTCCTCTAATTTGATCATGCGCCTCCCGTCTCTGATGTCTGAGATGTTGAGGGTAAGAGGAGTTCCGTTGCCGGAAGGT GGAGTGACGGGAGCTTTCGTGGGAGTTGGAGGGATGATTATGTTGGTTGCAGTGGCCAATTATGTTGTTGTTCAGATCAGGAAGCAGCGACAATATAGTA AGTGCCCATATGGCAGTATATGA
AA sequence Show only first row Show all	>Lus10015933 pacid=23143795 polypeptide=Lus10015933 locus=Lus10015933.g ID=Lus10015933.BGIv1.0 annot-version=v1.0 MTPGEVVFEYYYGVDFPKGHLALKSFHADVVDEDDNVIPYHEVYLHHSYIVSYYQARNYSIPPVKDIETLPYGDGFIYRRNHGICQGDILGQYFGLGTEM QTTPTNVPDPYGIEIGDPAQIPDDGFEEKWLLVVHVIDTRGAVDRLGCVECRRDLYNVTVDQFGEPLKPDYHGGLSCCYAHTKCKVRDDYHGPTRSLRMR YKLTWTDWIPSVIVPVRIYILDITDDMKLHVDPSNGAVTAHHDCRIEYDVERCNSGNGEKCVDVKKSIAAMPKGGNVLFGLTHLHSGAINSTLYGQDGRV LCKTEPIYGEGKEKEYVVGMTTCYPEPGSVVINDGELLVHESVYIADRRRTGVMGLFYLIVADQQHDDNTTASASSNLIMRLPSLMSEMLRVRGVPLPEG GVTGAFVGVGGMIMLVAVANYVVVQIRKQRQYSKCPYGSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10015933 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	4.8	0.7869
AT5G16660			unknown protein		Lus10026866 [exp]	7.6	0.8422
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	9.7	0.8441
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	10.1	0.8364
AT2G39170			unknown protein		Lus10040608 [exp]	14.4	0.7990
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	16.3	0.8330
AT5G15802			unknown protein		Lus10008785 [exp]	18.1	0.8336
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	19.5	0.7752
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	21.0	0.7743
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	23.7	0.8108

Compare expression of checked genes

Lus10015933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.