Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 48 / 3e-06 B3 Domain of unknown function (DUF313) (.1) AT2G31420 45 / 2e-05 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038980 [exp] 92 / 5e-21 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 90 / 2e-20 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 88 / 2e-20 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 84 / 1e-19 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10004910 [exp] 61 / 4e-12 AT5G43150 45 / 1e-07 unknown protein Lus10010543 [exp] 61 / 5e-12 AT5G43150 45 / 1e-07 unknown protein Lus10027287 [exp] 50 / 2e-07 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 44 / 9e-05 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 42 / 0.0001 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211000 [exp] 56 / 2e-10 ND / Potri.010G088200 [exp] 56 / 2e-10 AT5G43150 40 / 8e-06 unknown protein Potri.008G152200 [exp] 56 / 6e-10 AT5G43150 41 / 9e-06 unknown protein Potri.013G037800 [exp] 47 / 2e-07 AT5G43150 39 / 2e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015934 pacid=23143775 polypeptide=Lus10015934 locus=Lus10015934.g ID=Lus10015934.BGIv1.0 annot-version=v1.0 ATGGGTGAGCATTTATTGGGCGAAGATTCACGGATGAAGGAAGCACATGAAGCTTCTAATATAATAGAGGATTTGGAGAACAAGAGGCGATTGACCAATG ATGCTGAACACAAATCCATTGACGTCGCGGCAGCATCAGCAGCTCAATCTAAGATTGTTGAGGTGGGAATCAAGCTGGATTGCCTCGAGTCTCTCCTTCA CAACCCACCTTCTAACCCCCTTCTGACACTTGGAGGATCGGTTGACGCGAGGGCTAGAGAGATCAACCCAAGCATTGAAAGCCATGAGCAAGGGACAAAA AGAGGCGGCGAGGGCATATATGTGTTGTACGAGGATGTGAAGTCATGTCCTAGTGAGGATGTTCATGTTCTCTGGTCTATGCTCGTGGAAAACCATTTGC CTTCTTCTACTTGCATTCCATGCCATGAGAAGATTTGGCAACTCTGTAACCAACCAAATTTGTTGGCTGAATGCGCTGTGTCCGTCGGAGAATGCAATGG TTGCAGTCACTCTGATCCGTACACTTGCTTTGTCACCGTCTCAAAGACGGCAAAACCGCACAAGAAAGGCTGCTGCTGCTTCTTCTCTGCCTTTCTGCTG CTTTGTCACCGTCTCAAAGATCCGGATATGGAGGTTTCGCATGAAGTGTCGTTGAGGTGGTGGACGATGGACATCGCCTACGTTTACAATATCATCAAAG AAGGATGGAGGAATCTTATTGATCCGGCTGTAGACGATGTGGTGGAGCTCTGGGGTTTCAGGTCCCCTAATTCAGGAGAGCTCTGTTTTACATTGGTTAC TTTAGAAGGAAGACAGCTGCTGCTGAGAAGGAACAACAAATGA
AA sequence Show only first row Show all	>Lus10015934 pacid=23143775 polypeptide=Lus10015934 locus=Lus10015934.g ID=Lus10015934.BGIv1.0 annot-version=v1.0 MGEHLLGEDSRMKEAHEASNIIEDLENKRRLTNDAEHKSIDVAAASAAQSKIVEVGIKLDCLESLLHNPPSNPLLTLGGSVDARAREINPSIESHEQGTK RGGEGIYVLYEDVKSCPSEDVHVLWSMLVENHLPSSTCIPCHEKIWQLCNQPNLLAECAVSVGECNGCSHSDPYTCFVTVSKTAKPHKKGCCCFFSAFLL LCHRLKDPDMEVSHEVSLRWWTMDIAYVYNIIKEGWRNLIDPAVDDVVELWGFRSPNSGELCFTLVTLEGRQLLLRRNNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10015934 [exp]	0	1
AT5G59845			Gibberellin-regulated family p...		Lus10001407 [exp]	16.0	0.6191
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10018270 [exp]	16.3	0.6264
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	25.5	0.5953
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	39.5	0.5730
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	39.9	0.5754
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	45.9	0.5794
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	51.8	0.5650
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013056 [exp]	61.3	0.5129
AT5G58300			Leucine-rich repeat protein ki...		Lus10039483 [exp]	78.9	0.5070
					Lus10041330 [exp]	82.2	0.5124

Compare expression of checked genes

Lus10015934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.