Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04870 934 / 0 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT4G14210 249 / 9e-75 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009190 [exp] 1038 / 0 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10021967 [exp] 251 / 1e-75 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10041260 [exp] 253 / 2e-75 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10025080 [exp] 67 / 2e-11 AT4G14210 67 / 1e-11 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10024003 [exp] 45 / 0.0002 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050700 [exp] 1018 / 0 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.013G037700 [exp] 1013 / 0 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.014G148700 [exp] 248 / 3e-74 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.002G235200 [exp] 214 / 5e-62 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.004G177400 [exp] 60 / 2e-09 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.008G170300 [exp] 43 / 0.0006 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10015935 pacid=23143766 polypeptide=Lus10015935 locus=Lus10015935.g ID=Lus10015935.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGATTCTGTTTCCCGCGAATTCCGTCTCTGGAACTAGAACTTGGGGGAAACCCGCCTTCTTATTTTCCGGCCGACAGCGGTCGGCAGCCC AGGCTGTTAGGAGACTTCATGGGTCCTTCTCTGTTCGCTCCGCTTTGGATTCCTTGGAGGCTAACGTCTCTGACATGCGTGTTAATGCTCCAAAGGGGTT GTTTCCACCTGAACCTGAACATTATAGGGGACCAAAGCTTAAGGTAGCTATCATTGGTGCCGGCCTTGCTGGGATGTCAACTGCTGTGGAGCTGTTGGAT CAAGGGCACGAGGTTGATATATACGAATCAAGGACTTTCATTGGTGGTAAAGTTGGTTCTTTCGTTGATAAGGGTGGAAACCACATTGAAATGGGGCTTC ATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGTTTAATGAAGAAGGTAGGAGCAGATAAAAATTTGCTGGTGAAGGAGCACTCTCACACATTCGTGAA CAAGGGCGGTGACATTGGAGAACTTGATTTTAGATTCCCAGTTGGAGCTCCATTGCACGGGATTAATGCATTTTTAACCACAAATCAGCTTAAGACCTAT GATAAAGCAAGAAATGCCGTAGCTCTTGCACTAAGTCCAGTTGTAAGAGCCCTCGTAGACCCGGATGGAGCAATGCAAGATATCAGGAATCTGGACAGCA TAAGCTTCTCAGACTGGTTTATGTCGAAAGGAGGCACACGAACAAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTGGGGTTCATTGACTGTGA TAACATCAGTGCTCGTTGCATGCTCACTATATTCTCCTTGTTCGCCACCAAGACCGAAGCCTCCCTACTTAGGATGCTCAAGGGCTCCCCAGATGTTTTC TTGAGTGGTCCCATCAGAAAGTACATCACAGACAGAGGGGGCAGGTTCCATCTGAGGTGGGGATGCAGGGAAATTCTATACGACAAGTCTCCAGATGGTG AAACATACGTGACTGGTCTCGCCATGTCAAAAGCTACTAATAAGCAAATTGTCAAAGCTGATGCTTATGTTGCAGCATGTGATGTCCCTGGAATAAAGCG ACTGCTCCCATCTGAATGGAGGGAATCCAAATTCTTTGACAACATCTATGAACTAGTAGGAGTGCCTGTTGTCACAGTACAACTTAGGTACAATGGTTGG GTCACAGAGATGCAGGATCTTGAGCGTTCGAGGCAATTGAGGAAACCTGCAGGGTTGGATAACCTGCTGTACACACCAGATGCAGACTTCTCGTGTTTTG CAGACTTAGCTCTCACTTCTCCGGAAGACTACTACATTGAAGGGCAGGGTTCATTGCTCCAATGTGTTCTAACACCAGGTGATCCGTATATGCCTCTGCC AAATGATGAGATCATAAATAGAGTATCAAAGCAGGTTCTGAGTTTGTTCCCATCAGCCCAAGGTCTAGATTTCACCTGGTCATCTGTGGTAAAGATCGGC CAATCGTTGTACCGGGAAGGACCTGGGAAAGATCCATTCCGTCCAGATCAGAAGACTCCGGTGAAGAACTTCTTCCTTGCAGGTTCATACACAAAACAGG ATTACATAGACAGCATGGAAGGAGCTACATTGTCCGGCCGCCAATCTTCAGCCTACATTTGTCAAGCCGGGGAAGAGTTGGTAGCTCTGAAGAAGAAGAT TGCAGCAGCAGCAGCATCCATTGATGAAGAAAGTCAAGCAAGTTCAAAATCGGGCTCGGTCAGTGATGAACTCAGTCTTGTATAA
AA sequence Show only first row Show all	>Lus10015935 pacid=23143766 polypeptide=Lus10015935 locus=Lus10015935.g ID=Lus10015935.BGIv1.0 annot-version=v1.0 MAASILFPANSVSGTRTWGKPAFLFSGRQRSAAQAVRRLHGSFSVRSALDSLEANVSDMRVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLD QGHEVDIYESRTFIGGKVGSFVDKGGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKEHSHTFVNKGGDIGELDFRFPVGAPLHGINAFLTTNQLKTY DKARNAVALALSPVVRALVDPDGAMQDIRNLDSISFSDWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVF LSGPIRKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLAMSKATNKQIVKADAYVAACDVPGIKRLLPSEWRESKFFDNIYELVGVPVVTVQLRYNGW VTEMQDLERSRQLRKPAGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLPNDEIINRVSKQVLSLFPSAQGLDFTWSSVVKIG QSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQSSAYICQAGEELVALKKKIAAAAASIDEESQASSKSGSVSDELSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	0	1
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	7.4	0.9015
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	7.6	0.8561
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	9.0	0.8775
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	9.8	0.8879
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	11.4	0.8822
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	12.5	0.8719
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	14.1	0.8674
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	14.6	0.8866
AT2G41150			unknown protein		Lus10008860 [exp]	14.8	0.8283
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	16.2	0.8425

Compare expression of checked genes

Lus10015935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.