Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04890 223 / 7e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT2G46100 73 / 3e-15 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009193 [exp] 343 / 3e-120 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10036387 [exp] 84 / 4e-19 AT2G46100 283 / 8e-97 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10007918 [exp] 81 / 4e-18 AT2G46100 289 / 2e-99 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036500 [exp] 245 / 4e-82 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.002G162800 [exp] 77 / 5e-17 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.013G037050 [exp] 67 / 3e-14 AT3G04890 78 / 1e-18 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.014G092200 [exp] 44 / 5e-05 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10015938 pacid=23143783 polypeptide=Lus10015938 locus=Lus10015938.g ID=Lus10015938.BGIv1.0 annot-version=v1.0 ATGGCTGGAATTGTTTCATCCTCTCCGACCTCAACAATCACTCCCGCTCACTTAATCTCGAAGAGATCTCAGCGATCTCGAATACGATGCAGCTCACCAT CAAGCGAACCACCGCACAACCAACGAATTAACAACAGCTCCGGCGGCGGGAAGTCCAGGGCTGCCGAAACCAAAACCCCCACCGTTCTGAAATTCGTGGT GAGTGGAGTCACCGAGATCCTCAGACTCTTCTCTTCTTCTGATTGCAGAAAGGGCGATGTCGGTGTTACTGGCAAAAGTGATGGGCCCATTTCTGCGTTG AGCGTTGACGATGTTGTTAGGATACTAAGGATTGATTACCAGAATGCCTACTTCGTCACAGGCAGGAGTTTCACATCTGGACTCTATGTTGATGACTGTC TGTTTGAAGATCCAACTATCAGGTTCCGAGGTACTGATTTATATTCGCGCAACTTGAAGTTGCTGGTTCCTTTCTTTGACCATCCCTCCATTGGGTTACA AAGCATTGACAAGGATGTGAGTTCTAGGACAAACCTTGTACTCGCAACTTGGAAATTGAGAACATACCTGCGATTTCCATGGAGGCCGCTCATTTTAATC GATGGAGTCACAGTCTATGAACTGAATGAAGACTTCCGGATAGTTAGGCATACAGAGAGCTGGAATGTGTCTGCGCTTGATGCATTGGGCCAGATATTCA CTCCAAGCTTTGAAGATTAG
AA sequence Show only first row Show all	>Lus10015938 pacid=23143783 polypeptide=Lus10015938 locus=Lus10015938.g ID=Lus10015938.BGIv1.0 annot-version=v1.0 MAGIVSSSPTSTITPAHLISKRSQRSRIRCSSPSSEPPHNQRINNSSGGGKSRAAETKTPTVLKFVVSGVTEILRLFSSSDCRKGDVGVTGKSDGPISAL SVDDVVRILRIDYQNAYFVTGRSFTSGLYVDDCLFEDPTIRFRGTDLYSRNLKLLVPFFDHPSIGLQSIDKDVSSRTNLVLATWKLRTYLRFPWRPLILI DGVTVYELNEDFRIVRHTESWNVSALDALGQIFTPSFED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	1.0	0.9104
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	4.9	0.8858
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	6.3	0.8910
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	6.5	0.8668
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	7.3	0.8260
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	8.5	0.8935
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	9.5	0.8841
AT5G36930			Disease resistance protein (TI...		Lus10007810 [exp]	10.2	0.8879
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	13.6	0.8979
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	14.0	0.8644

Compare expression of checked genes

Lus10015938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.