Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54520 333 / 4e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001794 [exp] 414 / 4e-144 AT1G54520 433 / 1e-151 unknown protein Lus10006109 [exp] 42 / 0.0005 AT1G54520 43 / 9e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049500 [exp] 373 / 1e-127 AT1G54520 343 / 1e-115 unknown protein Potri.008G152400 [exp] 80 / 5e-17 AT1G54520 74 / 4e-15 unknown protein Potri.013G036201 [exp] 75 / 2e-16 AT1G54520 74 / 9e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07466 [flax] [poplar] DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence Show only first row Show all	>Lus10015939 pacid=23143784 polypeptide=Lus10015939 locus=Lus10015939.g ID=Lus10015939.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTGCTTCATTCCTCCACTGGAATCCCTTACAATGGAAGCATCTCCCTACCCGCACTTCCCCAATTCCCTATTCCTTCCCTCTCCGGATTC TCACCACCACCAACAAACCTTCCACTTCCAGATTCACCCTCCGCTGTTCCTTCCAAGCGAAGCATCTTAACGCCGATACCGAGGACAAGACTACTCTCCA AAGAGCTTGCGACGCCGCCCTCAAGGCCTTGGAGAAGCTCAAGAAGCCTGCAATAACCGCGGTTCTGATCGCGGCGTTACTGATGTACGATTCCGCAGCC GCATTAGCTGCCTCAGGGGGCAGGATGGGCGGGAAATCGTTTTCCCGTTCCTCTTCGTCTTCTTCGTCGAGGAGTTACTCCGTGCCTCGCGGTTCGGGTC CGAGCTTTTCCTACTCCGCTCCTTACTATGGACCGTCGCCGTTTGGTGGTGGAGGGCTATACGTGGGGCCGGCTGTTGGAGTTGGAGTTGGAGCTGGCTC CGGTTTGGTTCTGATTCTAGCTGGTTTTGCTGCCTTTGTGTTGGTCTCTGGATTTCTTTCCGATAGGGATGAAGGAGGGATCCTTGCTGCTACGGAGAAA ACCAGTGTTCTCAAGCTCCAGGTTGGTTTGCTAGGTATGGCGCGATCACTTCAGAAGGATCTTAATAGGATTGCAGAAGTTGCAGATACATCCTCCTCAC AGGGTCTAAGCTATGTATTAACAGAAACGTCACTTGCATTGCTTCGACATCCTGATTATTGCATCTCTGCTTACTCGTCTGTAGATGTTAAGCGAAGCAT GGAGGATGGTGAGAAACGCTTCAATCAGCTTTCTATTGAAGAACGGGGAAAGTTCGATGAAGAGACTCTAGTTAATGTGAACAGCATTAAGAGGCAGAGT AGCAAAACCCAGAGAGCAAGTGGGTTTAGCAACGAATACATAGTGATAACAATCTTGGTGGCAGCAGAAGGGGTGCATAAGTTACCAACCATTAACAGCG TTGCGGACCTGAAGGAAGCTCTGCAAAAGCTTGGATCAATTTCCTCTGGCAGTACACTGGCAGTTGAGGTGTTGTGGACGCCCCAAAATGAGGATGACAC TTTATCAGAGCGCGAACTTCTCGAAGATTACTCGCTGTTAAGGCCATTATGA
AA sequence Show only first row Show all	>Lus10015939 pacid=23143784 polypeptide=Lus10015939 locus=Lus10015939.g ID=Lus10015939.BGIv1.0 annot-version=v1.0 MAATASFLHWNPLQWKHLPTRTSPIPYSFPLRILTTTNKPSTSRFTLRCSFQAKHLNADTEDKTTLQRACDAALKALEKLKKPAITAVLIAALLMYDSAA ALAASGGRMGGKSFSRSSSSSSSRSYSVPRGSGPSFSYSAPYYGPSPFGGGGLYVGPAVGVGVGAGSGLVLILAGFAAFVLVSGFLSDRDEGGILAATEK TSVLKLQVGLLGMARSLQKDLNRIAEVADTSSSQGLSYVLTETSLALLRHPDYCISAYSSVDVKRSMEDGEKRFNQLSIEERGKFDEETLVNVNSIKRQS SKTQRASGFSNEYIVITILVAAEGVHKLPTINSVADLKEALQKLGSISSGSTLAVEVLWTPQNEDDTLSERELLEDYSLLRPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54520			unknown protein		Lus10015939 [exp]	0	1
AT1G73885			unknown protein		Lus10005112 [exp]	3.2	0.9516
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	4.5	0.9351
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	5.7	0.9095
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	7.0	0.9289
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	7.3	0.9406
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10037996 [exp]	7.8	0.8931
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	8.7	0.9391
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	11.7	0.9085
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	12.5	0.9241
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	12.8	0.9253

Compare expression of checked genes

Lus10015939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.