Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73430 1320 / 0 sec34-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001792 [exp] 855 / 0 AT1G73430 720 / 0.0 sec34-like family protein (.1.2) Lus10001793 [exp] 622 / 0 AT1G73430 533 / 0.0 sec34-like family protein (.1.2) Lus10000075 [exp] 175 / 9e-52 AT1G73430 117 / 4e-32 sec34-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138900 [exp] 1376 / 0 AT1G73430 1316 / 0.0 sec34-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04136 [flax] [poplar] Sec34 Sec34-like family
Representative CDS sequence Show only first row Show all	>Lus10015940 pacid=23143776 polypeptide=Lus10015940 locus=Lus10015940.g ID=Lus10015940.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAAGGAACTCAACCGAACATGCACAAATCCGTTGCAATTTCTAAGGGATACAACTTTGCTTCTAGCTGGGAACAGAATGCTCCTCTTACTG AGCAACAGCAAGCGGCCATTCTTTCACTCTCTCGTGCTGTTGAGGAGCGCCCGTATCCTGCCAATTTGTCTCAAGATCATACCCCAAGACCAGAGAATGG TGGCTTGACTGTATCTACCAAGGACAGTGTGCTGGGAGAGGCTCAAGCAATTGAAGCTGTTTTAGTCAATACAAATCAATTTTACAAGTGGTTCACGGAT CTTGAATCAGCAATGAAATCTGAGACAGAGGAAAAATATCAGCACTATGTGAACACATTAACAGACCGCATTCAGACGTGTGATGATATTCTTCGTCAGG TAGATGAAACATTAGACTTCTTCAATAGCCTACAGTTGCAACACCAAGCAGTAGCTACAAAGACAAAGACTCTCCATGATGCTTGTGATCGACTGTTGGT AGAGAAGCAGAGACTAATGGAATTTGCAGATGCACTACGGAGTAAACTCAGTTACTTTGATGAATTGGAGAATATTTCTACCAATTTTTATGCTCCAAAC ATGAATGTTGGGAATGGGAACTTTCTACCTCTACTCAAGCGGCTTGATGAGTGTATAGCGTATGTTGAAAGAAATCCACAATATGCTGAATCTAGTGTTT ACTTGCTCAAATTTCGGCAGCTCCAGTCTCGGGCCCTGGGTTTGATTCGTTCTCATGTGCTGTCAGTCTTGAAAGGTGCATCTTCCCAGGTTCAAGCAGC TATCCGGAGCTCTGGTGGCAGTAAAACGTCGCTTTCTGAGGGTGTGGAGGCATCTGTTATCTATGTTCGATTCAAGGCAGCTGCAAGTGAGTTAAAACCT GTTCTGGAGGAAGTAGAAGGTAGATCTGCTCGAAAGGAGTATGTATTGATGCTTGGAGAATGCCATAAGTTGTACTGCGAGCAGAGACTTTCTTTGGTAA AAGGCATAGTGCAACAGCGGATTTCTGAATTTTCCAAGAAAGAATCCCTGCCATCTTTAACTAGATCTGGATGTGCATATCTGATGCAGGTTTGTCAACT TGAGCATCAGCTCTTTGATCACTTTTTCCCATCTTCTTCAGAAAACGTTTCGAGTTTGGCTCCATTGATATATCCTCTGGCTACTTACTTGTATGACACC CTACGACCAAAACTTATACATGAAACAAGTGTTGATCTTCTTTGTGAACTTGTTGATATACTAAAAGTGGAAGTCCTAGGCGACCAGCTTAGCAAGCGGA GTGAATCCTTAGCTGGGCTGCGTCCAACCCTGGAAAGGATTTTAGCTGATGTTCATGAGCGATTGACTTTCCGTGCTCGAACTCATATTCGCGATGAGAT AGCAAATTATATTCCATCTGATGAAGACTTGAATTACCCTGCGAAGCTGGAGCAAACTAATGAGACAACGCCAGAAGCTTCTTTGGTTGATGAAAATGCG GAGCTGTTTAAAACATGGTATCCACCATTGGAGAAAACTTTATCATGCCTCTCCAAGTTGTACCGCTGTCTTGAACAATCCGTTTTCACTGGTTTGGCAC AGGAAGCAATGGAAGTCTGCTCTGATTCCATTCAAAAAGCTAGTAAACTAATTGCCAAGAGAACGACATCAATGGATGGACAGCTTTTCCTTATTAAGCA CCTTTTAATTTTGAGGGAGCAGATTGCGCCATTCGATATAGAGTTCTCTGTCACACACAAGGAGCTAGATTTCTCGCACTTGCTGGAGCAATTGAGACGG ATACTTAGAGGTCAGACCTCACTATTTGATTGGTCAAGATCAACGTCACTGGCTAGGACATTGTCTCCTCGAGTTCTAGAAAGCCAAGTTGATGCCAAAA AGGAACTTGAGAAAAGCCTCAAGGCCACTTGCGAGGAGTTCATCATGTCAGTGACCAAGTCAGTTGTGGATCCTATGCTCTCATTTGTTACGAAGGTGAC AGCAGTGAAAGTGGCCTTGTCTGTCGGCAGCCAGAGCCAGAGAGCAGACTCTATCATGACCAAGCCAATCAAGGATCAAGCCTTTGCTTCTCCAGAAAAG GTGGCCGAACTTGTTCAGAAGGTGAATGCTGCCATCCGGAAAGAGCTGCCGCCAGTGATGGAGAAAATGAAGCTTTACCTGCAGAACCCTTCAACACGAA CGATACTTTTCAAACCCATAAAGACGAACATAGTGGAAGCACACATCCAGGTACAGTCTCTGTTAAAAGCAGAGTACTCCACCGAAGAACAAACCACCAT CAACATGGTATCCATTGGTGACCTGCAAGCACAGCTAGACACACTCTTATGA
AA sequence Show only first row Show all	>Lus10015940 pacid=23143776 polypeptide=Lus10015940 locus=Lus10015940.g ID=Lus10015940.BGIv1.0 annot-version=v1.0 MAAKGTQPNMHKSVAISKGYNFASSWEQNAPLTEQQQAAILSLSRAVEERPYPANLSQDHTPRPENGGLTVSTKDSVLGEAQAIEAVLVNTNQFYKWFTD LESAMKSETEEKYQHYVNTLTDRIQTCDDILRQVDETLDFFNSLQLQHQAVATKTKTLHDACDRLLVEKQRLMEFADALRSKLSYFDELENISTNFYAPN MNVGNGNFLPLLKRLDECIAYVERNPQYAESSVYLLKFRQLQSRALGLIRSHVLSVLKGASSQVQAAIRSSGGSKTSLSEGVEASVIYVRFKAAASELKP VLEEVEGRSARKEYVLMLGECHKLYCEQRLSLVKGIVQQRISEFSKKESLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSENVSSLAPLIYPLATYLYDT LRPKLIHETSVDLLCELVDILKVEVLGDQLSKRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPAKLEQTNETTPEASLVDENA ELFKTWYPPLEKTLSCLSKLYRCLEQSVFTGLAQEAMEVCSDSIQKASKLIAKRTTSMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEQLRR ILRGQTSLFDWSRSTSLARTLSPRVLESQVDAKKELEKSLKATCEEFIMSVTKSVVDPMLSFVTKVTAVKVALSVGSQSQRADSIMTKPIKDQAFASPEK VAELVQKVNAAIRKELPPVMEKMKLYLQNPSTRTILFKPIKTNIVEAHIQVQSLLKAEYSTEEQTTINMVSIGDLQAQLDTLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	0	1
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	1.0	0.8781
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	2.8	0.8706
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	3.9	0.8432
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	5.3	0.8523
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	7.2	0.8180
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	8.8	0.8387
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	9.2	0.8690
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	11.0	0.8186
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	12.0	0.8281
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	13.0	0.8048

Compare expression of checked genes

Lus10015940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.