Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28050 238 / 3e-81 Cytidine/deoxycytidylate deaminase family protein (.1.2) AT3G05300 144 / 3e-45 Cytidine/deoxycytidylate deaminase family protein (.1) AT1G68720 72 / 6e-15 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT1G48175 39 / 0.0006 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001791 [exp] 279 / 9e-98 AT5G28050 288 / 7e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10034402 [exp] 71 / 8e-15 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10019153 [exp] 71 / 9e-15 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10028482 [exp] 43 / 4e-05 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10009163 [exp] 40 / 0.0004 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049300 [exp] 253 / 4e-87 AT5G28050 281 / 4e-98 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.013G036000 [exp] 250 / 6e-86 AT5G28050 275 / 1e-95 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.010G003500 [exp] 242 / 1e-82 AT5G28050 267 / 2e-92 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.008G111100 [exp] 77 / 8e-17 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.010G132600 [exp] 71 / 2e-14 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.006G075300 [exp] 44 / 1e-05 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10015942 pacid=23143796 polypeptide=Lus10015942 locus=Lus10015942.g ID=Lus10015942.BGIv1.0 annot-version=v1.0 ATGGCAGATGGCAACGCTGTGAAAGACAGAGACCACAAGTTCTTGAGTAGAGCTGTCGAGGAAGCATACAAAGGTGTTGAATGTGGACATGGAGGTCCTT TTGGCGCTGTCGTTGTTTGCAATGACGAAGTTGTGGTTAGCTGTCACAACATGGTCATGAAACACACTGACCCAACTGCTCACGCGGAGGTCACAGCTGT TAGAGAGGCATGTAAAAAGCTCAACAGAATCGAGCTGTCGGATTGCGAGATTTATGCATCCTGTGAACCGTGCCCAATGTGCTTTGGGGCCATCCATCTG TCTAGAATCAAGCGTCTGGTCTATGGAGCCAAAGCTGAAGCAGCAATTGCGATTGGTTTCGATGATTTCATTGCTGATGCGTTGAGAGGTACGGGGTTCT ACCAGAAGGCTAATTTGGAGATCAAGCAGGCTGATGGCAGCGGTGCTGTTATTGCGGAACAAGTGTTTGAGAACACCAAGGCCAGGTTTACCATGTACTG A
AA sequence Show only first row Show all	>Lus10015942 pacid=23143796 polypeptide=Lus10015942 locus=Lus10015942.g ID=Lus10015942.BGIv1.0 annot-version=v1.0 MADGNAVKDRDHKFLSRAVEEAYKGVECGHGGPFGAVVVCNDEVVVSCHNMVMKHTDPTAHAEVTAVREACKKLNRIELSDCEIYASCEPCPMCFGAIHL SRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANLEIKQADGSGAVIAEQVFENTKARFTMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	0	1
AT5G01970			unknown protein		Lus10031947 [exp]	2.0	0.8938
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	2.8	0.8827
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	5.5	0.9031
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	6.0	0.8856
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	6.9	0.8640
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	9.9	0.9045
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	10.5	0.9030
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	11.4	0.8806
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	12.6	0.8921
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	16.7	0.8712

Compare expression of checked genes

Lus10015942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.