Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04590 284 / 2e-95 EMB2748 unknown protein AT4G18975 133 / 9e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) AT4G21190 131 / 9e-37 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019008 [exp] 465 / 8e-168 AT1G04590 281 / 5e-93 unknown protein Lus10028526 [exp] 126 / 7e-35 AT4G18975 327 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10027535 [exp] 116 / 2e-31 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039292 [exp] 110 / 5e-28 AT4G21190 339 / 7e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009120 [exp] 71 / 7e-14 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103000 [exp] 294 / 2e-100 AT1G04590 300 / 9e-101 unknown protein Potri.006G091500 [exp] 291 / 1e-99 AT1G04590 272 / 3e-90 unknown protein Potri.016G102800 [exp] 164 / 9e-52 AT1G04590 158 / 2e-48 unknown protein Potri.011G076800 [exp] 139 / 5e-40 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Potri.017G148700 [exp] 133 / 6e-37 AT4G21190 339 / 3e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015943 pacid=23143769 polypeptide=Lus10015943 locus=Lus10015943.g ID=Lus10015943.BGIv1.0 annot-version=v1.0 ATGATTAATTTCATCATTGACCTTCGCATAATATTTCAGCCAAGATTTGGTCATCAAGCTGCATTCACAAATCTCGACCAAAATGGTGGAAGCACGCAGA AACGCCAAATAGGGGAGAATATTTCTAGAAAAGAGAGGACTACCTTTCTTGTTCGCACGCTCATGGATCTCAAAGACAGTAAAGAAGGTATTTATGGTGC TCTTGATGCTTGGGTTGCATGGGAACGAGAATTTCCTATTGGTCCCCTTAAACATGCTTTGCTGGCTCTTGAGAAGGAACAACAATGGCATCGGATAGTT CAGGTGATTAAATGGATTTTGAGCAAAGGTCAAGGAAACACAATGGGAACATATGGGCAATTGATACGGGCATTGGATAAGGACCACAGGGCAGAAGAAG CACATATTATTTGGACGAAGAAAGTTGGCAGAGATCTTCATTCTGTGCCTTGGAAGTTATGCAGCATGATGATATCATTATATTATAGAAACAACATGCT AGAGCGGCTTATAAAGCTTTTCAAGGGAATGGAAGCTTTTGATAGGAAACTTTATGACAAAGTAATAGTGCAGAGGGTAGCAGATGCATATGAGATGTCA GGGATGCCTGAAGAAAAAGAAAGAGTAGTTGAAAAGTACGCTAATGTATTCACGGTGGCAGAGAAACGATCTGCGAAGAAATCTAGATTGTCCTTGGCAA CGGAGAAGAAAGACGCTGGACAATGTGAGACTTGA
AA sequence Show only first row Show all	>Lus10015943 pacid=23143769 polypeptide=Lus10015943 locus=Lus10015943.g ID=Lus10015943.BGIv1.0 annot-version=v1.0 MINFIIDLRIIFQPRFGHQAAFTNLDQNGGSTQKRQIGENISRKERTTFLVRTLMDLKDSKEGIYGALDAWVAWEREFPIGPLKHALLALEKEQQWHRIV QVIKWILSKGQGNTMGTYGQLIRALDKDHRAEEAHIIWTKKVGRDLHSVPWKLCSMMISLYYRNNMLERLIKLFKGMEAFDRKLYDKVIVQRVADAYEMS GMPEEKERVVEKYANVFTVAEKRSAKKSRLSLATEKKDAGQCET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	2.0	0.8621
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	2.4	0.8203
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	3.2	0.8235
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	4.6	0.8372
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	5.1	0.8528
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	7.5	0.8199
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	7.7	0.8273
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	9.5	0.7851
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	10.4	0.7486
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	11.2	0.8022

Compare expression of checked genes

Lus10015943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.