Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04930 172 / 9e-50 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT5G28040 166 / 4e-47 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 85 / 4e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 83 / 2e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 83 / 2e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 78 / 1e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 73 / 4e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 71 / 7e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 67 / 5e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 65 / 2e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019007 [exp] 439 / 2e-153 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 216 / 5e-66 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004121 [exp] 114 / 4e-30 AT5G28040 93 / 1e-22 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 89 / 2e-19 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 88 / 2e-19 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 81 / 4e-17 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 79 / 4e-16 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 74 / 2e-14 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 73 / 3e-14 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261700 [exp] 194 / 8e-58 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 193 / 1e-57 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 97 / 3e-22 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 91 / 5e-20 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 77 / 5e-15 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 70 / 5e-13 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 54 / 5e-08 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10015944 pacid=23143792 polypeptide=Lus10015944 locus=Lus10015944.g ID=Lus10015944.BGIv1.0 annot-version=v1.0 ATGTCCTCTGCCGTGCAGGACAACGTCGTGTTCGATCATGATCTTGACGACGGCGATTCCCAGTCCCAGGACGACGACTACGACGATCTCGAGAATGACG ACGTCCTCGCTGTCGAGGAAGACGATGAGGACCTCAATTTCATCTCCCCTCCCACCCTCGTCACGCCTGCTCCTCCCGTCGCTGTCCCCTCCGCCTCCCT CGTCACCGTCGCTGCCGATCCGCACAAATTCGCGGCGGAGATGTCCAGCAGCGCTGTCCTCCCCGAAGCGAAGCGGCAGCGTACGGAGGCAATGATGATT GTCCCCTTGGATGAGAGGAAGCCTCAGCCGTTGGATAAATCGAGGCAGCTGTTTCAGCGGCTGTGGACTGACGAGGACGAGATCGAGCTCCTCCAAGGCT TCTTCGAGTACACAGCGCACCGCGGAGGGATCCATTACGACACGGCGATGTTCTACGACCAGATCAAGTCGAAGCTCCAGCTGGATTTCAACAAGAGCCA GCTGGTTGAGAAGCTGAGGCGTCTGAAGAAGAAATATAGGAATGTGTTGGCCAAGATCGATTCAGGGAAAGATTTTTCGTTCAAGAGCCCTCACGATCAG ATCACTTTCGAGATCTCGCGTAAGATCTGGAGCAGCACTGGGAAGCTAGCTGGTGTAGAGGATGGCAATTTGGAGGAGGAGGAGGAAGGAAACCCTAACC TTAACTACAACAACATGAATTCTTTCTCGAGTAATAATGGCGGTGAGATTAACCAAAAATCCACTCCGACTCCACGGAAACGCTCCCGATCTCGTTCCCT GGCCACTCCTCTCATTCTCGGCCGCTGTGGTGTTAGCGACGGTGGGGGTAAAATGGATGATAAAAATCAGGGTGTTGCTTCCAATAATAATGGCATTAGC AATAACAGTCATCACCATGGCAATGTAAATGTTGGGGGTTTGATTGAGGAGACAGTGAAGCGTTGCTTGTCCCCATTGTTTAAGGAGTTGCTGAAGAATA ACGCAATGGTGGGCGGTGTTGGGAGAGAGATAGGGGGTTTGGCAATGCCGTTGAATTTTGAAGGAGTGGAGATGATGGGTGATGAGAAGTGGAGGAAGCA ACAGATAATGGAGCTGGAGGTATACTTAAAGAGGTTGGAGTTGGTTCAAGATCAGATTAGATCACAGTTGGAGGAGTTGCGCTCCATATAA
AA sequence Show only first row Show all	>Lus10015944 pacid=23143792 polypeptide=Lus10015944 locus=Lus10015944.g ID=Lus10015944.BGIv1.0 annot-version=v1.0 MSSAVQDNVVFDHDLDDGDSQSQDDDYDDLENDDVLAVEEDDEDLNFISPPTLVTPAPPVAVPSASLVTVAADPHKFAAEMSSSAVLPEAKRQRTEAMMI VPLDERKPQPLDKSRQLFQRLWTDEDEIELLQGFFEYTAHRGGIHYDTAMFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLAKIDSGKDFSFKSPHDQ ITFEISRKIWSSTGKLAGVEDGNLEEEEEGNPNLNYNNMNSFSSNNGGEINQKSTPTPRKRSRSRSLATPLILGRCGVSDGGGKMDDKNQGVASNNNGIS NNSHHHGNVNVGGLIEETVKRCLSPLFKELLKNNAMVGGVGREIGGLAMPLNFEGVEMMGDEKWRKQQIMELEVYLKRLELVQDQIRSQLEELRSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	0	1
AT4G10810			unknown protein		Lus10023038 [exp]	1.4	0.9138
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	2.0	0.9037
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	5.1	0.9105
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	6.0	0.8941
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	8.0	0.8704
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	8.1	0.9018
AT4G22560			unknown protein		Lus10028927 [exp]	9.6	0.9081
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	9.9	0.8792
AT1G44414			unknown protein		Lus10025672 [exp]	9.9	0.8913
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	10.0	0.8372

Compare expression of checked genes

Lus10015944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.