Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 963 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 526 / 3e-171 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G75660 523 / 5e-170 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000941 [exp] 1051 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10004119 [exp] 1023 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10019004 [exp] 668 / 0 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 595 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 571 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 454 / 5e-144 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 431 / 6e-136 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 356 / 3e-107 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 348 / 7e-107 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 1087 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 1030 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 611 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 565 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 516 / 2e-167 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10015946 pacid=23143782 polypeptide=Lus10015946 locus=Lus10015946.g ID=Lus10015946.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCAGCGTTCTACAGGTGGCTGGCAGACCGCTACCCGCTCGCAATTGTTGATGTCGTGGAAGAGGAGTCGCAGGTGGAAGCGAACGGCGTCC CTGGACCTATTGACATCTCGAGACCTAACCCTAACGGCATGGAGTTCGATAATCTGTACTTGGACATGAATGGAATCATTCACCCTTGTTTCCACCCCGA CGGCAAGCCAGCACCTGGTACTTACGATGATGTTTTCCAATCAATTTTCGATTACATTGACCATCTCATTTCATTGGTTCGCCCAAGAAAGCTTCTCTTT CTGGCAATAGATGGTGTTGCCCCAAGAGCTAAAATGAACCAACAGCGATCTCGGCGCTTTAGAGCTGCAAAAGATGCTGCTGAAGCAGCAGCTGAAGAAG AAAGACTGAGGAAAGAATTTGAGGCAGAGGGCAAACTCTTGCCCACTAAAGAAAAACCTGAAACAGCAGACTCCAACGTCATCACTCCCGGCACTCCATT CATGGCAGTACTATCAGTTGCACTTCAGTACTACGTACAATCTAGGCTGAACAAAAACCCTGGGTGGCAGTGTATAAAGGTTCTTCTTTCTGATTCAAAT GTTCCTGGTGAGGGAGAGCATAAAATCATGTCATATATTCGATCACAACGCAACCTTGATGGTTTCAACCCAAACACCCGGCATTGTTTGTATGGCTTGG ATGCAGATTTGATTATGCTATCCCTAGCTACACATGAGATTCATTTTTCAATACTCAGAGAGATGGTCACATTTCCTGGACAGCAGGAGAAATGTTTTCA ATGTGGGCAAACTGGTCATCTTTCTGCTGAATGTCGCAGTAAGGATGGAGGTGATCCTGAAGTGTGGAATGTGGAAAATGATATTCCTATCTACAAGAAG AAGTATCAGTTCCTTAACATCTGGGTCTTGCGGGAATATTTAGAATTTGATTTGGATATTCCAAATCCTTCATTTACAATCAACTTCGAGCGCATTGTGG ACGATTTTGTATTCTTATGTTTCTTTGTTGGAAATGACTTCCTTCCACACATGCCAACTTTGGAAATTAGGGAGGGTGCTATAACTTTGCTTATGCATGT TTACCGAAGGGAATTCTCAGCAATGGGTGGTTATCTTACTGATGCGGGTGAGGTTCTTCTGGATCGAGTTCAGCATTTTATCCAAGCTGTTGCTGTTCAC GAGGAACAGATCTTCCAGAAGAGGACTCGAATACAGCAGGCTGGTTTTCTTCTCTTTCTTGGACTTCCTCATTTTGCTGATTTCTGGTGGAATTACTCTA AAAATAAACAAACCAATTCTGCTATAGAGCATAATGAAGAAATGAGGCTCAGGGCAAAAAGAGAGTCCCAAGAACAACCTCAGGCACCAGTTATAGATAA GGTCAAGCTCGGTGAGCCTGGATACAAAGATAGATATTATGCTGAAAAATTTGATGCATCAACACCAGAGGAGTTGGAGAAAGTGCGAAAAGATATACCT GAAGATATCTGTAAGATAGCAGCTGAGCAAAAGATCGGTCTTCTTGAAACCATTAAGGTTTCTGTAAGGCACCATCCATCTTCTTACAGCTCATATGTTC CTTGTCACAGAAGTGTGTGTTTATCATTTTGTCAGCTTAAGTGGCACCTTCCTCACAGGATGCAGACTTTCTGTTACAATTATTTTGAGATCGATATGAA TGGAAAACGCTTTGCCTGGCAGGGTATTGCAAAATTACCATTCATTGACGAGAGGAAATTGTTAGCTCAAACAAAGAAGCTTGAGAGTACATTAACGGAG GAGGAGAGGGTTCGCAACAGTGCCATGCTTGATCTGCTTTACATCCATCCTGTACATCCTTTGTCTCAGCAAGTTGTCTCTTACTACCATCACAACTATC AATTACCTCCTCATGAAAGATTCCTTTGGGCAATCGATCCAAGTGCTAGTGGTGGAATGAACGGCTATATTGGGTTGAGCGAGAGGAATGTGCACAGGAC CTTGCTCCCATCGCCTATAAAGGGATTGCCAACTATAGAGCATAACCTAGTTTTAAATATTACGTATCTTTCTCCTATGAGCCATAGACACATCCCTGAA CCCCCAGCTGGTGTAAAATTTCCCGGAAAGATCGTAAAGGCCGCAGACATCAAACCATTCCCTATACCATGGCATGAAGACAACAGTGGGCGGCGTCAAC AAGGCAGAGAGAGGCATCAATTACCTGGAGTAATTTCTGGTCCTCAATTGGGAGAAGCAGCTCATCGTCTTGTTAGGAACACTCTTAACATCAGATCAAA CAATGGATTGCTTGCACAGCCTCTACTTCCAAACGGTGTTGGCAATGCAATGGCTGGTAGGAGCAATAGGCCTGCACCTTATGGTTATGGAAGAGGCTAT GGTTATCATCCAAACAATCATGATGGTTACTACAACAACAACCATCAGGGACAAATGGGTGGATCTAAATCTCCTATCCCATCGAATGGTGTGCGACGAT CTCGACACAACTTTAGGCCCCAGGAGAGGTTTCGGAAGGGGGAGAAGTTCCGGGACTCGAGGACCAGGGTGTCTTCTTTGGCACTGGATGAAAACGTTGG AGTCCAGCCACCTGCAATTCTACAGCGGAAGCCAAGTTCAAGATATCCTCAAAACTTCAATCATCAGTTTGAGCAAAGCACGAGTCCCCTTCCCTCACCT CCCTCCAATTGGTCCAATAATATGCCAGAGGAAGCATCTGGGGGATATTTTAGACGAGGAGATACAGCCACAAGTAGCGCAAAGGAGAAGCAGCAAGTGA GACATGTCTATCAGATTAAGATGCGAGCAACTCCAGAAGCTTCAAAGACAGTTGCAGATCCAAACCACCAGTAG
AA sequence Show only first row Show all	>Lus10015946 pacid=23143782 polypeptide=Lus10015946 locus=Lus10015946.g ID=Lus10015946.BGIv1.0 annot-version=v1.0 MGVPAFYRWLADRYPLAIVDVVEEESQVEANGVPGPIDISRPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPGTYDDVFQSIFDYIDHLISLVRPRKLLF LAIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEERLRKEFEAEGKLLPTKEKPETADSNVITPGTPFMAVLSVALQYYVQSRLNKNPGWQCIKVLLSDSN VPGEGEHKIMSYIRSQRNLDGFNPNTRHCLYGLDADLIMLSLATHEIHFSILREMVTFPGQQEKCFQCGQTGHLSAECRSKDGGDPEVWNVENDIPIYKK KYQFLNIWVLREYLEFDLDIPNPSFTINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAITLLMHVYRREFSAMGGYLTDAGEVLLDRVQHFIQAVAVH EEQIFQKRTRIQQAGFLLFLGLPHFADFWWNYSKNKQTNSAIEHNEEMRLRAKRESQEQPQAPVIDKVKLGEPGYKDRYYAEKFDASTPEELEKVRKDIP EDICKIAAEQKIGLLETIKVSVRHHPSSYSSYVPCHRSVCLSFCQLKWHLPHRMQTFCYNYFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTE EERVRNSAMLDLLYIHPVHPLSQQVVSYYHHNYQLPPHERFLWAIDPSASGGMNGYIGLSERNVHRTLLPSPIKGLPTIEHNLVLNITYLSPMSHRHIPE PPAGVKFPGKIVKAADIKPFPIPWHEDNSGRRQQGRERHQLPGVISGPQLGEAAHRLVRNTLNIRSNNGLLAQPLLPNGVGNAMAGRSNRPAPYGYGRGY GYHPNNHDGYYNNNHQGQMGGSKSPIPSNGVRRSRHNFRPQERFRKGEKFRDSRTRVSSLALDENVGVQPPAILQRKPSSRYPQNFNHQFEQSTSPLPSP PSNWSNNMPEEASGGYFRRGDTATSSAKEKQQVRHVYQIKMRATPEASKTVADPNHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	0	1
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	2.0	0.9448
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	2.2	0.9387
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	2.6	0.9302
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	2.8	0.9408
AT2G46200			unknown protein		Lus10000549 [exp]	3.6	0.9179
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	4.1	0.9507
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	4.6	0.9423
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	4.6	0.9140
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	5.2	0.9287
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	5.7	0.9221

Compare expression of checked genes

Lus10015946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.