Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14880 481 / 2e-172 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 454 / 3e-162 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT2G43750 446 / 1e-157 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G59760 445 / 1e-156 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT5G28020 415 / 2e-146 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 415 / 3e-146 ATCYSD1 cysteine synthase D1 (.1) AT5G28030 393 / 1e-137 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G61440 365 / 6e-126 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 354 / 2e-121 CS26 cysteine synthase 26 (.1) AT1G55880 110 / 2e-27 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019003 [exp] 566 / 0 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 433 / 2e-153 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 432 / 5e-152 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 431 / 1e-151 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 365 / 5e-126 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 345 / 1e-117 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 325 / 2e-109 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 309 / 6e-105 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 302 / 1e-101 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048700 [exp] 538 / 0 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 537 / 0 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 534 / 0 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 512 / 0 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 447 / 7e-158 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048066 [exp] 440 / 2e-156 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 439 / 2e-155 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G035200 [exp] 429 / 1e-151 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 405 / 2e-142 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.014G086300 [exp] 381 / 4e-132 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10015947 pacid=23143764 polypeptide=Lus10015947 locus=Lus10015947.g ID=Lus10015947.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAAGATTGGGATTGCTAAGGATGTCACTGAGTTGATTGGTAAAACACCATTGGTGTATCTCACCAATGTCGTGGACGGCTGCGTGGCTC GGGTTGCTGCCAAACTAGAGATGATGGAGCCTTGCTCAAGCGTCAAGGATAGGATTGGATATAGTATGATAGCTGATGCCGAGGAGAAGGGTCTTATCAA GCCTGGTGAGAGCGTCCTTATTGAGCCAACAAGTGGAAACACTGGGATAGGGCTGGCATTCATGGCAGCAGCCAAGGGCTACAGACTTATAATTACCATG CCTGCTTCCATGAGTTTGGAGAGAAGAATGGTTCTCCGCGCTTTTGGAGCCGAGCTTGTTCTTACTGATCCTGCAAGAGGTATGAAAGGGGCTGTTCAGA AAGCAGAAGAGATCTTGGCAAAGACACCTAATGCTTACATTCTTCAGCAATTTGAAAACCCTGCGAACCCAAAGGTTCACTATGAAACCACAGGACCAGA AATCTGGAAAGGCTCAGCTGGCAAAGTAGACGCCTTTGTGTCTGGTATAGGAACTGGAGGAACAGTAACCGGTGCAGGGAAGTATCTTAAGGAGCAGAAC CCAGATGTAAAGCTTTATGGCGTTGAACCAGTTGAAAGTGCAGTGTTGTCTGGAGGAAAACCTGGCCCACATAAAATCCAGGGAATTGGTGCTGGCTTCA TCCCTGGAGTCTTGGATGTTGGTTTGCTTGATGAGGTCGTTCAAATATCGAGCGAAGAAGCTATCGAGACTGCAAAAACCCTTGCCTTGAGGGAAGGACT GATGGTAGGAATCTCATCTGGTGCAGCCGCAGCTGCTGCTATTAAGATAGCAAAGAGGCCTGAGAATGCTGGAAAGCTCATAGTTGTGGTCTTCCCAAGT TTCGGTGAGCGATACCTCTCATCGATACTCTTCGAGGATGTGAAGCGAGAAGCTGAGAACATGGTTTTCGAGCCTTGA
AA sequence Show only first row Show all	>Lus10015947 pacid=23143764 polypeptide=Lus10015947 locus=Lus10015947.g ID=Lus10015947.BGIv1.0 annot-version=v1.0 MAEEKIGIAKDVTELIGKTPLVYLTNVVDGCVARVAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM PASMSLERRMVLRAFGAELVLTDPARGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGSAGKVDAFVSGIGTGGTVTGAGKYLKEQN PDVKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVGLLDEVVQISSEEAIETAKTLALREGLMVGISSGAAAAAAIKIAKRPENAGKLIVVVFPS FGERYLSSILFEDVKREAENMVFEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	1.7	0.9298
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	1.7	0.9525
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	2.6	0.9227
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	3.5	0.9389
AT2G35360			ubiquitin family protein (.1)		Lus10004553 [exp]	5.7	0.8945
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	7.1	0.8848
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	7.4	0.9147
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	8.0	0.9214
AT2G25280			unknown protein		Lus10001950 [exp]	8.0	0.9069
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	8.4	0.9268

Compare expression of checked genes

Lus10015947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.