Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 111 / 6e-30 Seed maturation protein (.1) AT3G22500 97 / 9e-25 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT5G27980 45 / 7e-06 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019001 [exp] 224 / 7e-74 AT3G22490 262 / 3e-88 Seed maturation protein (.1) Lus10010553 [exp] 116 / 8e-32 AT3G22490 302 / 1e-103 Seed maturation protein (.1) Lus10006121 [exp] 108 / 9e-29 AT3G22490 311 / 1e-107 Seed maturation protein (.1) Lus10042604 [exp] 58 / 4e-10 AT3G22490 234 / 5e-77 Seed maturation protein (.1) Lus10022058 [exp] 55 / 1e-09 AT3G22490 98 / 6e-26 Seed maturation protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048000 [exp] 145 / 2e-43 AT3G22490 229 / 4e-75 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [flax] [poplar] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Lus10015948 pacid=23143778 polypeptide=Lus10015948 locus=Lus10015948.g ID=Lus10015948.BGIv1.0 annot-version=v1.0 ATGAGCCAGCAGCAACAGCCACAAAGTCCGCAAGACCCAATAAAGTATGGGGATCTCTTCCAGGACGTGCAGGGTGAGCTGGCGGAGAAGACGGTGGCCC CTAGACACGCCGCCATAATGCAAACCACCGAGAATACGTTGACCGGTAATACCAAGAAGGGTGGTGCGGCTGACGTTATGCAATCCGCGGCTGACAAGAA CGAACGGGCTGGCTTTGTCAGACATGATGATGTTAGCAATGTTGCCGACGACCTCGGTGTTACCGCTACAGAGATTGATTTCCCCGCTGGCGGAAGCGTC ATCATCGAATCTGTCGGCGGACAGGTTGTTGGGAAGTTTGACAAGGAGTCGTCAAAGGTGCCGGCGACTCAGCAGGGTGGTGGAGGTGGAGCGGTGACGA TAGGGAAGAAGCCAGTAGAGAGAAGCGACGCAGCAGCCATTCAAGCAGCGGAGGTTAGAGCAACGAACCGGACCACCATCGTCCCTGGAGGGACAGCTGC CGCAGCTCAGTCGGCAGCTACTCTCAACGCGCTAAGGCTACAACCGACGAGGAGAAAACTACTATTGCCGATGTGCTCTCTCTGTAAGCATGCATGCAGT TTCATCATTAATTAG
AA sequence Show only first row Show all	>Lus10015948 pacid=23143778 polypeptide=Lus10015948 locus=Lus10015948.g ID=Lus10015948.BGIv1.0 annot-version=v1.0 MSQQQQPQSPQDPIKYGDLFQDVQGELAEKTVAPRHAAIMQTTENTLTGNTKKGGAADVMQSAADKNERAGFVRHDDVSNVADDLGVTATEIDFPAGGSV IIESVGGQVVGKFDKESSKVPATQQGGGGGAVTIGKKPVERSDAAAIQAAEVRATNRTTIVPGGTAAAAQSAATLNALRLQPTRRKLLLPMCSLCKHACS FIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	0	1
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	1.0	0.9099
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	1.4	0.8643
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	1.7	0.8364
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	3.6	0.7379
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	5.9	0.7668
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10028053 [exp]	6.0	0.7889
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	7.3	0.7474
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	8.4	0.7456
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018768 [exp]	9.9	0.7377
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	12.1	0.6445

Compare expression of checked genes

Lus10015948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.