Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57620 595 / 0 glyoxal oxidase-related protein (.1) AT1G19900 498 / 4e-172 glyoxal oxidase-related protein (.1) AT1G75620 494 / 3e-170 glyoxal oxidase-related protein (.1) AT1G14430 487 / 2e-167 glyoxal oxidase-related protein (.1) AT3G53950 382 / 1e-126 glyoxal oxidase-related protein (.1) AT5G19580 379 / 5e-125 glyoxal oxidase-related protein (.1) AT1G67290 370 / 2e-121 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030798 [exp] 501 / 8e-173 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 462 / 3e-158 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 402 / 1e-134 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 380 / 7e-125 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011111 [exp] 378 / 3e-124 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 374 / 3e-123 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 379 / 2e-122 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 375 / 4e-122 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 371 / 5e-121 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047701 [exp] 608 / 0 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 602 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 523 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 514 / 3e-178 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 506 / 8e-175 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 482 / 1e-165 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 456 / 2e-155 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 393 / 3e-131 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 394 / 1e-130 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 392 / 6e-130 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10015949 pacid=23143801 polypeptide=Lus10015949 locus=Lus10015949.g ID=Lus10015949.BGIv1.0 annot-version=v1.0 ATGACCACAATCATCACCACTAATATCATTACCTCACTATCTATCCTCCTGCTCCTCCTCATCTTTCACCCTCTTCTAACCAGCTCCCAACCCAGCCGCC ATGGCGAATGGCGGCTTCTCCTCCCAAACATAGGTATATCAGCAATGCACATGCAGCTTCTTCACAACAACAAAGTCGTCATGTTCGACCGCACCGATTT CGGCCCTTCCAACCTCACCTTCCCCAACGGCCGCTGTCGCTTCGACCCTGATGACACCGCACTTCAACTCGATTGCACTGCTCACTCTGTCCTCTACGAC ATTTCCACCAACCATATCACACCCCTCATGATCCATACCGACACTTGGTGCTCCTCTGGAGCTCTTCTCCCCAATGGAACTCTACTCCAGACGGGTGGCT TCCACGACGGTGACCTTGTCATACGTACATTCACCCCACCGTCTGACCAATTCGCCTATTCTGATTGGATCGAGTTCCCTGGTTACTTGACCAGGAGGAG ATGGTATGCAACTAACCAAATTCTTCCAGACGGCAGGGTCATCATCCTTGGTGGTAGGAGACAGCACAATTACGAGTTCTACCCTAGCGATTCTAAATTC TATAGGCTTGATTTGCTGAGGGAAACTAGAGATGGTCGCCTTGAGAACAATCTATACCCATTCATTCACCTACTCCCTGACGGAAACCTATTCATTTTCG CTAACAATAGATCGATTCTATTTAATTATAACCAGAACAGAGTTCTTACCGAGTATCCATCGATTCCCGGTGGCGATCCTCGGAATTATCCAAGCTCAGG ATCCTCTGTTCTACTCCCGCTAGTTGACAATGGAACTGGGAGCAAAATTGAAGCTGAAGTCATGATCTGCGGCGGGGCCAGTCGAGGAGCAGCCAGATTA GCCTCGGAGGGGAACTTCCTCCCGGCTATCGCGTCTTGCGGCAGGCTCAGAGTCTCTGATCGTAACCCTAGCTGGAACATGGAGACGATGCCGGTGGCGC GTGTCATGGGAGATATGCTCCTCCTCCCCACGGGAGACGTCATCATAATCAACGGCGCCGGGAGAGGCACTGCTGGATGGGAGAACGGTCGGGATCCGGT GACCACGCCGGTCGTTTACAGACCCCAGGCGCTTCACGCCTGGCGATTCACCGTCATGGCGCCGACGCCAACAGCGCGGATGTACCATTCCTCGGCGGTT GTGTTAGGCGACGGCCGAGTACTGGTCGGAGGAAGTAACCCTCACATCTTCTACAACTTCAGCAACGTTGTGTACCCGACGGAGCTGAAACTGGACACGT TCTTGCCGCCGTACCTGTCGCCGGTGTACGACCCGGTGAGGCCGAGGGTTTTCGGCGCTGGGACGGTGGTGACGGTGACTAGAAGCTACGGGGATAAAAT CCGAGTGAGCTTCTACGTGGATCGGTACTTGAGTATGAGCGCAGTGTCGGTTCGGATGGTGGCGCCGTCTTTCACGACTCATTCGTTCGCAATGAACCAG AGGATGGTGGTGCTGAGGGTTGTTGATGTGGAAAAGAAGAAGAAGAATCCGGATATCTATAGTTTGGAAGCTCTTGCTCCATCGACGGCTGCGATTGCGC CTCCAGGGTATTATATGCTGTTCGTGGTGCACGCAGGAATTCCCAGTTCCTGCGTTTGGGTCAAGTTACAGTAG
AA sequence Show only first row Show all	>Lus10015949 pacid=23143801 polypeptide=Lus10015949 locus=Lus10015949.g ID=Lus10015949.BGIv1.0 annot-version=v1.0 MTTIITTNIITSLSILLLLLIFHPLLTSSQPSRHGEWRLLLPNIGISAMHMQLLHNNKVVMFDRTDFGPSNLTFPNGRCRFDPDDTALQLDCTAHSVLYD ISTNHITPLMIHTDTWCSSGALLPNGTLLQTGGFHDGDLVIRTFTPPSDQFAYSDWIEFPGYLTRRRWYATNQILPDGRVIILGGRRQHNYEFYPSDSKF YRLDLLRETRDGRLENNLYPFIHLLPDGNLFIFANNRSILFNYNQNRVLTEYPSIPGGDPRNYPSSGSSVLLPLVDNGTGSKIEAEVMICGGASRGAARL ASEGNFLPAIASCGRLRVSDRNPSWNMETMPVARVMGDMLLLPTGDVIIINGAGRGTAGWENGRDPVTTPVVYRPQALHAWRFTVMAPTPTARMYHSSAV VLGDGRVLVGGSNPHIFYNFSNVVYPTELKLDTFLPPYLSPVYDPVRPRVFGAGTVVTVTRSYGDKIRVSFYVDRYLSMSAVSVRMVAPSFTTHSFAMNQ RMVVLRVVDVEKKKKNPDIYSLEALAPSTAAIAPPGYYMLFVVHAGIPSSCVWVKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	0	1
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	3.5	0.8400
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	4.7	0.8147
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	5.3	0.8354
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	5.7	0.8380
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	5.9	0.8287
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	6.5	0.8036
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	6.5	0.8101
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	7.7	0.8328
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	11.8	0.7913
AT5G57510			unknown protein		Lus10009171 [exp]	12.1	0.7653

Compare expression of checked genes

Lus10015949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.