Plant FIBer expression Database

Lus10015950 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G33370 135 / 1e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
AT3G04290 135 / 4e-37 ATLTL1, LTL1 Li-tolerant lipase 1 (.1)
AT5G18430 135 / 4e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT4G28780 133 / 2e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT1G71250 101 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT3G50400 94 / 9e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT2G23540 94 / 1e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT4G16230 90 / 4e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT5G41890 86 / 5e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT5G08460 84 / 2e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003107
[exp]
131 / 7e-38 AT3G04290 213 / 6e-69 Li-tolerant lipase 1 (.1)
Lus10004771
[exp]
131 / 9e-38 AT3G04290 213 / 5e-69 Li-tolerant lipase 1 (.1)
Lus10004774
[exp]
130 / 1e-36 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10004770
[exp]
127 / 1e-36 AT4G28780 181 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10003106
[exp]
126 / 7e-34 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1)
Lus10003108
[exp]
99 / 4e-24 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10003579
[exp]
93 / 5e-21 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1)
Lus10039152
[exp]
91 / 1e-20 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10022471
[exp]
90 / 3e-20 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G051100
[exp]
139 / 9e-39 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Potri.019G024800
[exp]
136 / 2e-37 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Potri.002G253400
[exp]
134 / 9e-37 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G024700
[exp]
133 / 1e-36 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Potri.013G051000
[exp]
131 / 9e-36 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1)
Potri.019G024400
[exp]
128 / 1e-34 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1)
Potri.019G024600
[exp]
127 / 2e-34 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Potri.019G067600
[exp]
92 / 3e-21 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.008G104600
[exp]
89 / 3e-20 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.017G130100
[exp]
88 / 8e-20 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10015950 pacid=23169809 polypeptide=Lus10015950 locus=Lus10015950.g ID=Lus10015950.BGIv1.0 annot-version=v1.0
ATGAGGACCACAACCACAGCTGCCACCGCTGTTGTGCTCGTAGCAGTGACCCTGACAGTTGTGGTCTCGCAGGTAGCAGGGCAGGGTCCAGCTCCAGCTC
CATCTCCAGCCTCAACCCCTCCTACTCGAGCCTTTATGGTGTTTGGGGACTCCCTAGTGGATGCTGGCAACAATTACTACTTAATAACAACAGCCCGTGC
TGATACGGTGCCCAATGGCATCGACTACCCTGGCCAAGTACCCACCAGCCGCTTCTCAAACGGCCTCAACTTTGCCGACCTTATCGCCGAGGCGCTTGGG
ATTCAGTCGCCGCTTCCCTTCCTAGACCCGGCTCTTCATGGAGACAAGCTGCTAGCTGGTGCCAACTTTGCCTCCGTCGGCATCGGAATCCTCAACTACA
CCGGTTTTCAGTTCGGGAGGATAGAAGGGTGTCAGGGGCACGACTCAGGTTACGGTATTGAAAATGTACCAGCAACTACAAATGTTCTTAGAGTACAAGC
ACAAGGTGGCCGGGGTAGTGGGTCCGGGGAAGGCGCAGGAGCTGGTGAGAAAGGCTTTGTTCCTAGTAACCTATGGAGGGAACGATTTCTACAAGAAGAT
ACTGTTGGCGCTTTACGGCTGGGAGCGAGGAGGATATTTGTGACTGGGACTGGAACGCTAGGGGACGTCGGCACCCATATCTTCATCTCCGCTAATGCTT
TTTCCGTCAAGATGGACATGATCGAGAAACCCCAGCTATACGAAGCTAATGAACTCCACCTCCCAGACGACATCAGGCCCATGAACCTACTCACCATGAT
GGTTGTTGATACTGCTGCTGCCGCCGCCCAACAGCCTTAA
AA sequence
>Lus10015950 pacid=23169809 polypeptide=Lus10015950 locus=Lus10015950.g ID=Lus10015950.BGIv1.0 annot-version=v1.0
MRTTTTAATAVVLVAVTLTVVVSQVAGQGPAPAPSPASTPPTRAFMVFGDSLVDAGNNYYLITTARADTVPNGIDYPGQVPTSRFSNGLNFADLIAEALG
IQSPLPFLDPALHGDKLLAGANFASVGIGILNYTGFQFGRIEGCQGHDSGYGIENVPATTNVLRVQAQGGRGSGSGEGAGAGEKGFVPSNLWRERFLQED
TVGALRLGARRIFVTGTGTLGDVGTHIFISANAFSVKMDMIEKPQLYEANELHLPDDIRPMNLLTMMVVDTAAAAAQQP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04290 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) Lus10015950
[exp]
0 1

Lus10015950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.