Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027146 [exp] 118 / 1e-31 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 53 / 1e-08 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 50 / 7e-08 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015096 [exp] 49 / 3e-07 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 49 / 3e-07 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031578 [exp] 48 / 4e-07 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015095 [exp] 48 / 5e-07 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10031581 [exp] 47 / 8e-07 AT4G23310 213 / 2e-60 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10031580 [exp] 47 / 1e-06 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 54 / 2e-09 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 47 / 8e-07 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.010G108100 [exp] 46 / 1e-06 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.004G024101 [exp] 46 / 1e-06 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G086000 [exp] 44 / 8e-06 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.007G120700 [exp] 44 / 1e-05 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 44 / 1e-05 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.007G120800 [exp] 43 / 1e-05 AT4G23170 85 / 7e-20 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 9, receptor-like protein kinase-related family protein (.1) Potri.008G133500 [exp] 43 / 2e-05 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.007G120401 [exp] 43 / 2e-05 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015952 pacid=23169804 polypeptide=Lus10015952 locus=Lus10015952.g ID=Lus10015952.BGIv1.0 annot-version=v1.0 ATGGTTGAAAAATGGGTTTCTTTAATTCTTGCACTCGTGTATCTCAGCAAATCTCTCATACCATTCCTCCCTCTGCAAAAGATGTACACTTTGATCATGC TTCTAGCTCTGTTGCTGCTTCATTTTTGCTACCTTGTTACTGCTAAAACAGATCCCTTTGTATTCTGTGGCACAAACGGAAACTACACCTCAGGAAGTCC CTACCAGCAGAACTTGAACCTGACCTTGAGCTCGCTCGCTGCGAATGCTTCGGTTACAGGTAACCACACTACTTCGAAAGGATCGAGTCCGGATACTGTC TATGACCTCATTCAGTGCAGAGCTTATCTATCTAAACAAGACTGTCAAACTTGTGCAGACAAGCATTGCTCTAGGGACAACAAACCACGCGGGAGAAACA CTTGA
AA sequence Show only first row Show all	>Lus10015952 pacid=23169804 polypeptide=Lus10015952 locus=Lus10015952.g ID=Lus10015952.BGIv1.0 annot-version=v1.0 MVEKWVSLILALVYLSKSLIPFLPLQKMYTLIMLLALLLLHFCYLVTAKTDPFVFCGTNGNYTSGSPYQQNLNLTLSSLAANASVTGNHTTSKGSSPDTV YDLIQCRAYLSKQDCQTCADKHCSRDNKPRGRNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	0	1
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	1.0	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	6.3	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	7.1	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	7.7	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	8.9	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	9.0	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	10.0	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	11.0	1.0000
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	11.1	0.9843
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	11.8	1.0000

Compare expression of checked genes

Lus10015952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.