Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43320 423 / 2e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14000 165 / 3e-49 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023222 [exp] 130 / 8e-36 AT4G14000 335 / 3e-116 Putative methyltransferase family protein (.1) Lus10008886 [exp] 126 / 4e-34 AT4G14000 300 / 2e-102 Putative methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G031700 [exp] 491 / 3e-176 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G127300 [exp] 477 / 6e-171 AT2G43320 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G321100 [exp] 182 / 1e-55 AT4G14000 350 / 8e-122 Putative methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015953 pacid=23169792 polypeptide=Lus10015953 locus=Lus10015953.g ID=Lus10015953.BGIv1.0 annot-version=v1.0 ATGCAGGCTGCGCTTCACCATGACAAGTATGCTGGAGAGAATGATGAACTGCATAGTCTTAATAATGTATTCAAGGGAAGAGTGAGCGTTGCTGATATAA TTGGGTTCGCTGGCTCTGACATTATATCATCAAAACCAGATGGGTCTATGAAATTTTGTGACAGCTCTATTGATCTTGTAAACGTACTCAAGAATGAGAT TCGTGATGGGCAACTGAGCTTTAGAGGCAAGAGGGTCCTTGAGCTCAATTGCAACCATGGACTTGCAGGAATTTTTGCTTGTTTGAAGGGTGCTGCAACT GTTCATTTTCAAGACTCGAGTGCAGAAACTATAAGGTGTTCAACCATACCAAATGTGCTGGCGAATCTTGAGCAAGCTCGGGATAGGCAGAGCAAGCAAC CAGAATCCCCCGTGACGCCCTCAAGACATACTCTATCTCCCGTGTTGCACTTCTACGCAGGGGACTGGGAAGAACTGCCGAGTGTATTATCTGTAGTGAG GAACGAGACATGTGAAGGGATGACCCTGAGTTTCTCAGAGGAGGATTTCCTGGATGGTTGTAGCAGTCAAGATGGCAGTGTCGTGGGGCAGGAAACTGCA GCAAGACGATCAAGGAAGCTTTCAGGGAGCCGGGCGTGGGAGAGGGCGAGTGACAAGGATAATGGAGAGGGTGGCTATGATGTTATTTTGATGACCGATA TCCCATACTCAGTGACGCCCTTGAAGAAGCTATATGCACTGATTAACAAGTGTGTGAGGCCGCCGTATGGAGTATTGTACTTGGGAACAAAGAGAAATTA TTATGGTGGTGGAGCACGGCAACTGAGAAGCTTGGTGGATGAACAAGGCATCTTTGGTGGTCATCTTGTGAAAGATATGGCTGATCGAGATATCTGGAAG TTCTTCCTCAAGTAA
AA sequence Show only first row Show all	>Lus10015953 pacid=23169792 polypeptide=Lus10015953 locus=Lus10015953.g ID=Lus10015953.BGIv1.0 annot-version=v1.0 MQAALHHDKYAGENDELHSLNNVFKGRVSVADIIGFAGSDIISSKPDGSMKFCDSSIDLVNVLKNEIRDGQLSFRGKRVLELNCNHGLAGIFACLKGAAT VHFQDSSAETIRCSTIPNVLANLEQARDRQSKQPESPVTPSRHTLSPVLHFYAGDWEELPSVLSVVRNETCEGMTLSFSEEDFLDGCSSQDGSVVGQETA ARRSRKLSGSRAWERASDKDNGEGGYDVILMTDIPYSVTPLKKLYALINKCVRPPYGVLYLGTKRNYYGGGARQLRSLVDEQGIFGGHLVKDMADRDIWK FFLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	0	1
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	1.0	0.9585
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	1.7	0.9445
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	2.8	0.9440
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	3.5	0.9544
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	3.9	0.9324
					Lus10036131 [exp]	4.0	0.9417
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	4.9	0.9263
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	5.0	0.9261
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	5.2	0.9410
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	5.7	0.9357

Compare expression of checked genes

Lus10015953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.