Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59380 414 / 1e-145 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1) AT4G24490 85 / 8e-18 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 72 / 2e-13 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000763 [exp] 647 / 0 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10022404 [exp] 86 / 5e-18 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10001518 [exp] 85 / 9e-18 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10031441 [exp] 84 / 2e-17 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10042569 [exp] 51 / 8e-07 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127500 [exp] 454 / 1e-161 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.006G225100 [exp] 76 / 6e-15 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Potri.013G047100 [exp] 48 / 7e-06 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Lus10015954 pacid=23169805 polypeptide=Lus10015954 locus=Lus10015954.g ID=Lus10015954.BGIv1.0 annot-version=v1.0 ATGGATTGGGAAGACGACGATGACCAAACCCCGCTGTCGCAGAGGCCGGAGTGGTCGGATATCAATCCTCTCCCGCAAGACGACGGTCCAAACCCTGTGG TACCGATCGCATACAAGCTGGAGTTCGAGGAGACGATGGACTACTTCCGTGCCGTTTATTGGGCTGATGAGCGATCTACTCGCGCCCTTCAGCTCACTCA CAAAGCCATTCTCCTCAACGCCGCCAATTACACTGTTTGGCATTTCAGGCGTTTGATACTCGAGACATTAAATAAAGAACTTCATCACGAAATCACCTAT GTTTCCAAGATTGCAGAGAAAAACTCAAAAAATTATCAGATATGGCATCACAGACGCTGGGTCGTGGAGAAACTGGGTCCAGCTGCAGCTCATACAGAAC TTGAATTTACCAAGAAGATACTCTCCGGTGATGCTAAGAACTATCACGCATGGTCCCACAGGCAGTGGGTTTTGCAAGCTTTGGGGGGATGGGACGAGGA GCTTGAGTTCTGCCATCAGCTACTTAAAGATGATGTTTTCAACAACTCAGCTTGGAATCAGAGATACTTTGTCATAACGAGATCTCCTCTACTAGGAGCT CACGAAGCCAGGACAGAGGCTGAAGTGAAGTACACAGTTCAGGCTATCCTCGCAAATCCCGAGAACGAGAGTCCATGGAGGTATCTCCGAGGTCTCTACA AGGACGACCTAGATTTGTGGATTCGTGATCCTCAAGTTACAAATGTGTGTCTAAAGGTTTTAACTAGAAGAATGAGTGGCCTCCCGGATCCTGAGCACCC TCCTCTGCTAAAGTTGTTTGCGATGAGTACTCTCTTGGATCTTCTGAGTCATGGGTTGCAGCCAAGTCAAGAGTTGAGAGAAGCTGTGGATGCCCTGAAT CCGACTACTGCTTCAGACCCAATGTCACAGGACAGCAATTTGGGTTGTGCAATCTGTTCTTTGTTGGAGCATGCAGATCCAATGAGAGTCAAGTACTGGA GATGGCGCAAAAGCCGGTTACTTGTTAAATGA
AA sequence Show only first row Show all	>Lus10015954 pacid=23169805 polypeptide=Lus10015954 locus=Lus10015954.g ID=Lus10015954.BGIv1.0 annot-version=v1.0 MDWEDDDDQTPLSQRPEWSDINPLPQDDGPNPVVPIAYKLEFEETMDYFRAVYWADERSTRALQLTHKAILLNAANYTVWHFRRLILETLNKELHHEITY VSKIAEKNSKNYQIWHHRRWVVEKLGPAAAHTELEFTKKILSGDAKNYHAWSHRQWVLQALGGWDEELEFCHQLLKDDVFNNSAWNQRYFVITRSPLLGA HEARTEAEVKYTVQAILANPENESPWRYLRGLYKDDLDLWIRDPQVTNVCLKVLTRRMSGLPDPEHPPLLKLFAMSTLLDLLSHGLQPSQELREAVDALN PTTASDPMSQDSNLGCAICSLLEHADPMRVKYWRWRKSRLLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	1.4	0.8497
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	2.2	0.8648
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	2.6	0.8295
AT1G48440			B-cell receptor-associated 31-...		Lus10040126 [exp]	3.5	0.8434
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	3.9	0.8377
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	4.2	0.8486
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	4.9	0.8263
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	4.9	0.8192
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	5.5	0.8075
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	8.7	0.7709

Compare expression of checked genes

Lus10015954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.