Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59420 1230 / 0 ACR4 crinkly4 (.1) AT3G09780 364 / 6e-113 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G39180 344 / 1e-105 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT5G47850 329 / 3e-100 CCR4 CRINKLY4 related 4 (.1) AT3G55950 263 / 2e-75 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G39000 261 / 2e-74 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 256 / 1e-72 Malectin/receptor-like protein kinase family protein (.1) AT3G04690 256 / 1e-72 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT3G58690 244 / 2e-72 Protein kinase superfamily protein (.1) AT3G07070 241 / 3e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000764 [exp] 1662 / 0 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10029170 [exp] 351 / 5e-108 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10041404 [exp] 347 / 2e-106 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10036524 [exp] 344 / 1e-105 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10018242 [exp] 296 / 2e-87 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10012995 [exp] 256 / 2e-78 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10038595 [exp] 246 / 2e-73 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028285 [exp] 254 / 3e-72 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10027509 [exp] 254 / 4e-72 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128400 [exp] 1371 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 1363 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G221200 [exp] 384 / 7e-121 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 381 / 1e-119 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.008G068700 [exp] 365 / 3e-113 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 354 / 5e-109 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 348 / 4e-107 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 289 / 3e-85 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.001G252400 [exp] 266 / 2e-76 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.008G181200 [exp] 256 / 4e-72 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015956 pacid=23169799 polypeptide=Lus10015956 locus=Lus10015956.g ID=Lus10015956.BGIv1.0 annot-version=v1.0 ATGTTGCCATTCATCTCAGCTCTAGGATCAATGTCCTCCATCGCTATCTCCTATGGAGACAAAGGTTCTGTTTTCTGTGGCCTCAAGTCCGATGGATCCC ATTTAATTACCTGTTATGGTTCGAACTCAGCTATAATCTATGGAACACCACTTCACTTCCCTTTCAGTGGACTCACCGCTGGTGATGGCTTTGTCTGTGG GCTTCTTTTGGACTCAAACCAACCTTATTGCTGGGGAAGTAGTGACTACATTCAAATGGGTGTCCCCCAACCGATGCTTAAAGATGCCGAGTATGTAGAA ATCAGTGCAGGAGATTACCATTTATGCGGCTTGAGGAAGCCTTTAACTGGCAGGCTGAGGAATTACTCTCTTGTTGATTGTTGGGGTTATAACATGACCA AGAACCACCAGTTTGATGGTCAAATCAAGTCGATTTCAGCTGGTTCAGAGTTCAACTGCGGGTTGTTTTCTCAGAACAGGACGGTGTTCTGTTGGGGTGA TGAGACTAGCAGCAGAGTTATCAGTCTTATTCCCAAAGAAATGAGGTTTCAAAAGATTTCTGCAGGTGGCTATCATGTATGTGGTATTCTTGAAGGAATT AACTCTAGACCCTTTTGCTGGGGAAGGAGCTTGGACCTTCAAGATGAGATATCTTTGATAGACAACAACAATTCTGGTGGGGATTTGCCTCCAACTGATC CATTGATTTCCGTGGTTGGAGGCAAGTTTCATGCTTGTGGGATCAAGAGCAATGACCGAGGAGTTATCTGCTGGGGGTTTGCTTTAAAGAGAAGCACACC ACCTCCTAAAGGCATTAAAGTTTACCAGATTGCTGCTGGGAATTACTTCACTTGTGGAATTCTTGTTGAGAAAGACCTTTTGCCTGTGTGTTGGGGGCTT GGATTTCCCACTACTCTACCAGTGCCTGTCTCACCTGGTTTGTGCATAACTGCTCCTTGTACATCTGGAACCTATGAGCTTACCCCTGACATCAATGCAC CATGTAAAGCTATTCCTTTCTCTCATGTCTGCCTGCCTTGCACCAACGGTTGTCCTCCTGAAATGTATCAGAAAACTCAATGCACACTGAAATCAGATCG CGAATGTGAGTACAACTGTTCAGGATGTTATTCAGCAGAATGCTTCTCAAAATGTTCTCGAAAACGGAAAAAGAATGAAAGGGTTTGGTCATTGCAGCTG CCTGTAATTATTGCCGAGGTTTCCTTCGCTGTATTCTTGGCAATTATTGTATCTACGATTACTGTTTTATATGTCCGGTACAGGTTGAGGAACTGTCGTT GCTCAACTGCTAAGAAGAGCAGCAATGGCAAAGGGGGTCCCTCGTTGCAGAAAGAGAATGGGAAGATCCGACCAGATATGGATGAGCTGAAGCTGACAAG GAGGGCGGTGATGTTCAGTTATGACGAACTTGACAAGGCAACCAATGGTTTCAAAGATGAATCTTTGGTAGGGAAAGGTAGCTTCTCATGTGTTTACAAA GGCGTTCTCAAGGATGGGACTATGGTTGCTGTAAAAAAGGCAATTGTATCTTCAGATAAGCAGAAGAACTCCAAAGAATTCCACACTGAGCTTGATCTAC TATCGAGGTTGAATCATGCACATTTGCTGAACTTACTGGGTTACTGTGAAGAAGGTGGTGAAAGGCTTCTTGTGTATGAATTCATGGCTCATGGATCATT ACACCAGCACCTTCATGGGAAGAACAAGGCATTGAGAGAACAACTAGATTGGATTAGACGGGTGACGATCGCAGTCCAAGCAGCTCGTGGAATTGAATAC CTGCATGGATATGCTTGCCCTCCAGTGATTCATCGAGACATCAAGTCATCAAACATACTGATCGACGAAGAGCACAATGCACGAGTGTCTGATTTTGGTC TCTCCTTGCTAGGACCAGTTGATAGCAGCTCTCCCCTTGCTGAGTTGCCTGCAGGGACACTAGGATACCTTGATCCTGAGTATTACAGGCTTCACTACCT GACGACCAAGTCTGATGTATACAGCTTCGGGGTGCTGCTTCTTGAGATACTGAGTGGGAGAAAGGCTATTGATATGCAGTGTGAAGAAGGGAACATAGTA GAATGGGCAGTTCCATTGATCAGAGCAGGAGATACATCGTCCATCTTGGACACAGTCCTAAAGCCCCCGTCTGATTTGGAAGCATTGAAAAGAATAGCCC ATGTGGCTTGCAAGTGTGTTAGGATGAGAGGCAAGGAAAGACCATCTATGGACAAGGTGACCACAGCATTGGAACGTGCATTGGCTCAGCTGATGGGGAG TCCATGCTACGAGCAGCCGATACTACCAACTGAGGTGGTGCTAGGTAGCAGCCGGATGCACAAGAGATCGTCGCAGAGGTCATCAAACAGGTCCGGTTCT GAGACAACCGAAGTTGTGGTGATGGAAGGGGGGGAAGAGCAGAGGATTGAGTTGAGAGCTCCTTCATGGATAACGTTTCCTAGCGTGACATCTTCCCAAA GGAGGAAGTCGTCGGTCTCGGATGCAGATGTTGATGGTAAAACTTCAGAAGCAAGGAACGTAGTACTAAGTGCAGGATGTGGAGGAGGGGATGGGTTAAG GAGGTTAGATGAAGAGATTGGTCCTGCTTCTCCTCGGGAAAATCTATACCTGCAGCATAATTTCTGA
AA sequence Show only first row Show all	>Lus10015956 pacid=23169799 polypeptide=Lus10015956 locus=Lus10015956.g ID=Lus10015956.BGIv1.0 annot-version=v1.0 MLPFISALGSMSSIAISYGDKGSVFCGLKSDGSHLITCYGSNSAIIYGTPLHFPFSGLTAGDGFVCGLLLDSNQPYCWGSSDYIQMGVPQPMLKDAEYVE ISAGDYHLCGLRKPLTGRLRNYSLVDCWGYNMTKNHQFDGQIKSISAGSEFNCGLFSQNRTVFCWGDETSSRVISLIPKEMRFQKISAGGYHVCGILEGI NSRPFCWGRSLDLQDEISLIDNNNSGGDLPPTDPLISVVGGKFHACGIKSNDRGVICWGFALKRSTPPPKGIKVYQIAAGNYFTCGILVEKDLLPVCWGL GFPTTLPVPVSPGLCITAPCTSGTYELTPDINAPCKAIPFSHVCLPCTNGCPPEMYQKTQCTLKSDRECEYNCSGCYSAECFSKCSRKRKKNERVWSLQL PVIIAEVSFAVFLAIIVSTITVLYVRYRLRNCRCSTAKKSSNGKGGPSLQKENGKIRPDMDELKLTRRAVMFSYDELDKATNGFKDESLVGKGSFSCVYK GVLKDGTMVAVKKAIVSSDKQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKALREQLDWIRRVTIAVQAARGIEY LHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPVDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQCEEGNIV EWAVPLIRAGDTSSILDTVLKPPSDLEALKRIAHVACKCVRMRGKERPSMDKVTTALERALAQLMGSPCYEQPILPTEVVLGSSRMHKRSSQRSSNRSGS ETTEVVVMEGGEEQRIELRAPSWITFPSVTSSQRRKSSVSDADVDGKTSEARNVVLSAGCGGGDGLRRLDEEIGPASPRENLYLQHNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59420		ACR4	crinkly4 (.1)		Lus10015956 [exp]	0	1
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	2.8	0.8929
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	4.9	0.8650
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	6.9	0.8994
AT3G58650			unknown protein		Lus10029857 [exp]	7.5	0.8544
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	8.8	0.8673
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	9.5	0.8534
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	14.8	0.8845
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	16.6	0.8767
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	17.4	0.8524
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	18.2	0.8493

Compare expression of checked genes

Lus10015956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.