Plant FIBer expression Database

Lus10015959 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24620 914 / 0 PGI1 phosphoglucose isomerase 1 (.1.2)
AT5G42740 108 / 8e-25 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000767
[exp]
1099 / 0 AT4G24620 1018 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10007154
[exp]
105 / 2e-23 AT5G42740 953 / 0.0 Sugar isomerase (SIS) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G104000
[exp]
934 / 0 AT4G24620 1006 / 0.0 phosphoglucose isomerase 1 (.1.2)
Potri.008G118900
[exp]
102 / 8e-23 AT5G42740 973 / 0.0 Sugar isomerase (SIS) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00342 PGI Phosphoglucose isomerase
Representative CDS sequence
>Lus10015959 pacid=23169802 polypeptide=Lus10015959 locus=Lus10015959.g ID=Lus10015959.BGIv1.0 annot-version=v1.0
ATGGCTTCCCTTTCCAGTCTCTGTTCGTCCTCTCCTTCTATCAAGCTTAAGCCAGCCGCTTCTCTTCCCAAGGTCATCCTTAATAACCCTGCAAACCCCA
CTTCTCTCACCTTCCTTAATCTCTCCAAACCACCACCAGCTGCAGTTACTTACTCCGTCGCTCGTGAGGTCGCCGCCGATCTGTCCAGCACAGGTAACAA
CGCCCCTTTTAAAGGACTCGAAAAGGATCCGAAGGCGCTGTGGAGGAGGTACGTCGACTGGCTCTACCAACACAAAGAGCTCGGGCTTTACTTAGACGTT
AGCAGGATTGGGTTCACCGATGACTTCTACCGTGAAATGGAGCCTCGCTTCCAGCAGGCTTTCGATTCGATGCGGGAGTTGGAGAAAGGATCGATTGCCA
ATCCGGACGAAGGTAGGATGGTCGGCCATTATTGGCTCAGAGATTCGGACCTCACTCCCACGCCCTTCTTGAAAACGCAGATTGAGACCACTCTTGATCA
AATTTGCACCTTCGCTGATCAAGTCGTCAGCGGTAAGGTTAAACCTCCGTTGTCTGGAGCTGTCCGTTTTATGGAGCTGCCCGTTTTACTCAGATACTCT
CTGTTGGGATTGGCGGTTCAGCTCTTGGGCCACAATTTGTTGCCGAGGCTTTGGCTCCTGATAACCCTCCTCTCAAAGTTTATCGATAACACGGATCCAG
CTGGAATTGATCATCAGGTTGCTCAGCTCGGCTCTGAGTTGGCATCTACTCTCGTGATCGTGACTTCTAAGAGTGGAGGCACGCCTGAAACTAGAAATGG
TTTGCTGGAAGTGCAGAAGGCCTTCCGCGAAGCTGGTCTTGATTTTGCGAAACAGGGTGTTGCGATTACGCAAGAAAATTCATTACTGGATAATACTGCT
AGAATTGAAGGTTGGTTGGCAAGGTTCCCTATGTTTGACTGGGTTGGTGGAAGAACATCTGTAATGTCTGCAGTTGGCTTACTCCCAGCAGCACTTCAGG
GAATTGACATTAGAGGAATGCTTGCTGGTGCAGCACTAATGGATGAGGCAACTAGGGACACAGATCTGAGGAATAACCCGGCAGCTCTACTATCTTTAAG
CTGGTACTGGGCCACCGATGGGGTAGGATCCAAGGACATGGTTGTCCTTCCATACAAGGATAGTCTTTTGCTATTTAGTCGGTATCTACAGCAGCTGGTC
ATGGAATCTCTTGGGAAGGAGTTTGACCTTGACGGAAATCGGGTTAATCAAGGACTTACAGTTTATGGAAATAAAGGGAGCACAGATCAACATGCATACA
TTCAACAACTGAGGGAGGGTGTGCACAATTTCTTTGCAACCTTCATTGAAGTTCTGCGTGATAGACCCCCTGGTCATGATTGGGAACTTGAACCAGGAGT
TACATGTGGTGACTATCTATTTGGAATGCTACAGGGAACTAGGTCAGCTCTATATGCTAATGGTCGAGAGTCTGTATCAGTGACAGTAGAAGAGGTGACA
CCTAGGACAGTAGGGGCTCTTATTGCACTGTATGAGCGAGCGGTTGGATTGTATGCCTTTCTTGTCAACATTAATGCCTACCATCAACCCGGTGTGGAAG
CTGGGAAAAAGGCAGCAGGAGAAGTATTGGCTCTACAGAAGAGGGTATTGGCAGTTCTGAACGAGGCAAGCTGTAAAGAGCCTGTGGAGCCATTGACGCT
TGAGGAAGTAGCGGATCGTTGCCATGCCCCAGAGGATATTGAAATGATATACAAGATCATAGCACACATGGCAGCAAATGACAGAGCACTGATAGCGGAA
GGCAGTTGCGGATCACCGCGCAGCATCAAAGTTTACCTTGGGGAGTGCAATGTTTATTGA
AA sequence
>Lus10015959 pacid=23169802 polypeptide=Lus10015959 locus=Lus10015959.g ID=Lus10015959.BGIv1.0 annot-version=v1.0
MASLSSLCSSSPSIKLKPAASLPKVILNNPANPTSLTFLNLSKPPPAAVTYSVAREVAADLSSTGNNAPFKGLEKDPKALWRRYVDWLYQHKELGLYLDV
SRIGFTDDFYREMEPRFQQAFDSMRELEKGSIANPDEGRMVGHYWLRDSDLTPTPFLKTQIETTLDQICTFADQVVSGKVKPPLSGAVRFMELPVLLRYS
LLGLAVQLLGHNLLPRLWLLITLLSKFIDNTDPAGIDHQVAQLGSELASTLVIVTSKSGGTPETRNGLLEVQKAFREAGLDFAKQGVAITQENSLLDNTA
RIEGWLARFPMFDWVGGRTSVMSAVGLLPAALQGIDIRGMLAGAALMDEATRDTDLRNNPAALLSLSWYWATDGVGSKDMVVLPYKDSLLLFSRYLQQLV
MESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANGRESVSVTVEEVT
PRTVGALIALYERAVGLYAFLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLEEVADRCHAPEDIEMIYKIIAHMAANDRALIAE
GSCGSPRSIKVYLGECNVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24620 PGI1 phosphoglucose isomerase 1 (.1... Lus10015959
[exp]
0 1
AT4G00590 N-terminal nucleophile aminohy... Lus10040935
[exp]
4.5 0.7788
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Lus10030305
[exp]
8.1 0.8069
AT1G03370 C2 calcium/lipid-binding and G... Lus10001915
[exp]
8.7 0.8028
AT3G48860 unknown protein Lus10016721
[exp]
10.6 0.8370
AT5G58100 unknown protein Lus10008552
[exp]
14.5 0.7765
AT1G03370 C2 calcium/lipid-binding and G... Lus10003910
[exp]
14.5 0.7663
AT1G17760 CSTF77, ATCSTF7... ARABIDOPSIS THALIANA CLEAVAGE ... Lus10028994
[exp]
15.7 0.7742
AT4G16150 CAMTA calmodulin binding;transcripti... Lus10036455
[exp]
17.2 0.7830
AT1G70060 SNL4 SIN3-like 4 (.1) Lus10013293
[exp]
20.5 0.7764
AT5G41370 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODER... Lus10032287
[exp]
23.6 0.7621

Lus10015959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.