Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24610 1430 / 0 unknown protein AT5G65440 1100 / 0 unknown protein AT5G48310 811 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000766 [exp] 2193 / 0 AT4G24610 1499 / 0.0 unknown protein Lus10016071 [exp] 849 / 0 AT5G48310 1328 / 0.0 unknown protein Lus10025189 [exp] 815 / 0 AT5G48310 1258 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104100 [exp] 1711 / 0 AT4G24610 1508 / 0.0 unknown protein Potri.014G172000 [exp] 889 / 0 AT5G48310 1350 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015962 pacid=23169794 polypeptide=Lus10015962 locus=Lus10015962.g ID=Lus10015962.BGIv1.0 annot-version=v1.0 ATGAAACACTCCAACCGCCTCCCGCCCTCCTCCAAGTTTAGGAGCGGCCACCTCCCCACCACTGCAATCCCGGTCTCCACAAGGTCCCTCTCAGACGCTA CTGACTCCGATGATGATGAAGATGAAGTTTACGGGGGACGCGATTCCCTTGATTACATCCCTAATTCCAACTCGAGGTATCCCAATTATTCTTCCGCTTC TACTTACTCTGATGTTACTTCCTCCATGGAGACGGCTGTGGGGAGAAATAGCAATGTACCTTCCAGGCTGCCCAGGGGGAGTGGTTTTAGTGCTAGATTC GGCAGACCAGGCCGTGCTGGGAGGAGTGCGTGTACCGAGGATGAGAACGATGAGGACTCCAATTCTGCTTCCAGCTCTGAGTTCTCCACAACTCAAGCAG CAAGTAGTAATGGTTTCCCTTTGCCTGGAAGTAGGCTGCGTGTCTCTGAAGATTATGCATCCAGTGCCGCTTCTCGACCCAATGTGGATACCTTTGCTGC CAAGGTTGCTCATCCTCTAAATCTACCTAATGAGAAATCTTCGTTTGATGGTGATGTACCAAGCGCACCTCCATTTTCTGGATCTCGTCCTGAGATTAAA GAAGCTGTTGAGGCAACATCAGAATTACTTAAGATCTCTCAGACTGCAGCTTCCAGTGGGTTCTCTAACACTGTATATAATACTGGAAGCAAGAATTTGG ATCAGTCTGGAAGTGAAACAAGTGCTGAACAACCACTGTCTTCTGTTCCAAACCCAGCTCGAGTTCCAACATTCCATGCGAGCGCACTGGGTCCATGGCA TGCTGTAATTGCATACGATGGATGTGTGCGGCTTTGCCTCCATGCTTGGGCTAGGGGTTGCATGGAAGCTCCTATCTTCTTGGAGAATGAGTGTGCTCTG CTCCGTGAGACATTTGGTGTACAGAATGTGCTGTTGCAATCTGAGGAGGAATTATTATCAAAGCGCTCCTGTGAGCTTGGAGGCGAGGGAGCTGCTACGA AGCCTAAAAAGATCATTGGAAAGATGAAGGTGCAAGTTCGTAAAGTGAAAACAATGCTCGATCCTCAACCTGGGTGTAGTATGTCTGCGCTAGCTTTGAG GTCGCCAAAGTTGGAAATGGTTCAATATCGTTTCTCCAGGTTTCAATCATCAATCTATACTGGCTGGAAGGCTTTCAGAAGGATTCGTGTTGCACCTCGT ATACCTGCAAATGGTTCTTTCAGACGTCAGAGCGTGGCTTATGTGCAAGCTAGCACCCAATACATAAAGCAAGTGTCTGGACTTCTTAAATCTGGTGTAA CAAGCCTCCGCAACAGCTCTTCATCATATGAAGTTGTGCAAGGCAAGGAAAAAACATATTCTTGCTCATTATGGTTGAAAAGTTCAGCAGAAGAAGATGC AATCAAGATGCAACCTGGATCTGGTGAAACTCATGTATTCTTTCCAGATAGCCTTGGGGATGATCTAATCATTGAAATCCAAGACTCTAAGGGGAAAAGT TTTGGTCGTGTCGCTGCTCAAGTTGCTACCATCTCTGAAGATTCGGTTGATAAGTTGCGGTGGTGGTCTATCTACAAAGAGCCCGAGCATGAACTTGTGG GCAAAGTGCAACTGTATATCAATTATTCAACAAGCTCAGAAGATGGTAATCCAAAATATGGTTCAGTGGCTGAAACAGTTGCGTATGACATTATTTTGGA AGTTGCCATGAAAGTTCAAAATTTTCAACAAAGGAAATTGGTGTTATATGGTTCATGGAAGTGGCTTCTCAATGAGTTTGCTACATATTATGGGGTTTCT GATGTGTACACCAAACTAAGACACCTTTCCTATGTGATGGATGTAGCTACACCAACAGCAGACTGCCTGACCTTGGTGTATGATTTACTTACACCTGTGA TCATGAAAGGCCATAGCAAGAGCGCGCTAAGCCATCAGGAGAATCGAATATTGGGAGAAATAAAGGATCAGATTGAACAGATTCTTTCTCTAGCTTTTGA GAACTACAAATCTCTTGATGAATCATTGCTCTCGGGTATCATGGATGTCTTCAAACCTGCGACAGCAATTGCAGCTCCTGCACTGGAACCTGCTGTAAAG CTGTACACTCTTCTAAATGATGTATTGTTACCTGAGGCACAAACTAAACTGACTCATTACTTCCAGGTTGCTGCAAAGAAGAGGTCTAAAAGGCATTTGA GTGAGACGGATGAATATGTAACCAATAACAGTGAAGGGATTTTAATGGATCCAATTGCTAACACTACTGCTTATCAGAAAATGACTTCCCTGTGTATGAA CATAAAAAATGAAATTTACACTGATATGGAGATTCAGAGTCAACACATACTTCCCAGTTTTATAGACCTTCCAACCTTATCCGCGTCCATATACAGCACT GAGCTGTGCAGTAGATTGCGAGCTTTCTTAGTATCTTGTCCCCCATCTGGTCCTTCACCTCACGTTGCAGAACTTGTTATCGCGACTTCAGATTTTCAGA GGGAGATTGCCAGTTGGAACGTAAGTCCTGTGAAAGGAGGAGTTGATGCGAGGGAATTATTTCATTTGTATATCATGCTATGGATTCAAGACAAACGGCT TTCACTTCTTGAGTCATGCAAATTAGATAAGGTGAAATGGTCAGGTGTCCGGACACAAAATTCTACCACTCCCTTTATTGATGAAATGTATGAGAGGCTT AGGGAGACATTGGATGATTATGAAATCATTATCTGTCGCTGGCCTGAATACATCTTCGTGCTGGAAAATGCAATTGGTGATGTGGAGAAGGCAATTGTGG AAGCATTGGATAAGCAGTATGCGGATGTTCTTGCACCAATGAAAGAGAATTTGGCACCGAAGAAGTTTGGGTTTAACTATGTCAAGAAACTTACGAAACG TTCTGTGTGTGCTTACACAGTTCCTGATGAGCTTGGAATTCTGTTGAATTCAATGAAACGAATGCTTGACCAGTTCCTTCCAAAGATTGAAATTCGGTTC AAGTCTTGGGGATCTTGCATACCTGATGGTGGGAACACAGCTCCTGGGGAACGTTTAAGTGAAGTGACTGTGATGTTGAGGACAAAGTTCCGAAGTTATC TACAAGCTGTTGTAGAAAAACTCGCAGAAAATGCAAAGCTGCAAAATGCGACAAAGTTAAAAAAGATACTTCAAGAATCAAAAGAATCGGTTGGAGAAGC AGATTTAAGGGGGAGAATGGAATCTCTAAAAGAGCAGCTAAAGAATACAGTGAATCACCTGCATTCGGTGTTTGAGACTCATGTGTTCATTGTAATCTGT CGTGGATATTGGGACAGAATGGGGCAGGATGTTCTGAGCTTCATGGAGAACAGGAAAGAGAATAGGTCATGGTATAAAGGTTCTCGTGTTGCAGTTTCTG TGTTAGACGATACCTTTGCATCGCAAATGCAGCAGCTTCTTGGAAATGCGATACAAGACAAGGATCTAGAGCCCCCCAGATCCATCATGGAGGTCCGCTC AATGCTCTGTAAGGATGCACCCAATCATAAAGACAACGGCTATTATTACTGA
AA sequence Show only first row Show all	>Lus10015962 pacid=23169794 polypeptide=Lus10015962 locus=Lus10015962.g ID=Lus10015962.BGIv1.0 annot-version=v1.0 MKHSNRLPPSSKFRSGHLPTTAIPVSTRSLSDATDSDDDEDEVYGGRDSLDYIPNSNSRYPNYSSASTYSDVTSSMETAVGRNSNVPSRLPRGSGFSARF GRPGRAGRSACTEDENDEDSNSASSSEFSTTQAASSNGFPLPGSRLRVSEDYASSAASRPNVDTFAAKVAHPLNLPNEKSSFDGDVPSAPPFSGSRPEIK EAVEATSELLKISQTAASSGFSNTVYNTGSKNLDQSGSETSAEQPLSSVPNPARVPTFHASALGPWHAVIAYDGCVRLCLHAWARGCMEAPIFLENECAL LRETFGVQNVLLQSEEELLSKRSCELGGEGAATKPKKIIGKMKVQVRKVKTMLDPQPGCSMSALALRSPKLEMVQYRFSRFQSSIYTGWKAFRRIRVAPR IPANGSFRRQSVAYVQASTQYIKQVSGLLKSGVTSLRNSSSSYEVVQGKEKTYSCSLWLKSSAEEDAIKMQPGSGETHVFFPDSLGDDLIIEIQDSKGKS FGRVAAQVATISEDSVDKLRWWSIYKEPEHELVGKVQLYINYSTSSEDGNPKYGSVAETVAYDIILEVAMKVQNFQQRKLVLYGSWKWLLNEFATYYGVS DVYTKLRHLSYVMDVATPTADCLTLVYDLLTPVIMKGHSKSALSHQENRILGEIKDQIEQILSLAFENYKSLDESLLSGIMDVFKPATAIAAPALEPAVK LYTLLNDVLLPEAQTKLTHYFQVAAKKRSKRHLSETDEYVTNNSEGILMDPIANTTAYQKMTSLCMNIKNEIYTDMEIQSQHILPSFIDLPTLSASIYST ELCSRLRAFLVSCPPSGPSPHVAELVIATSDFQREIASWNVSPVKGGVDARELFHLYIMLWIQDKRLSLLESCKLDKVKWSGVRTQNSTTPFIDEMYERL RETLDDYEIIICRWPEYIFVLENAIGDVEKAIVEALDKQYADVLAPMKENLAPKKFGFNYVKKLTKRSVCAYTVPDELGILLNSMKRMLDQFLPKIEIRF KSWGSCIPDGGNTAPGERLSEVTVMLRTKFRSYLQAVVEKLAENAKLQNATKLKKILQESKESVGEADLRGRMESLKEQLKNTVNHLHSVFETHVFIVIC RGYWDRMGQDVLSFMENRKENRSWYKGSRVAVSVLDDTFASQMQQLLGNAIQDKDLEPPRSIMEVRSMLCKDAPNHKDNGYYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24610			unknown protein		Lus10015962 [exp]	0	1
AT4G24610			unknown protein		Lus10000766 [exp]	1.0	0.9553
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	5.0	0.8920
AT1G27595			unknown protein		Lus10028229 [exp]	6.9	0.9206
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	6.9	0.9033
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	7.2	0.9170
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	7.9	0.9125
AT1G27595			unknown protein		Lus10007230 [exp]	8.7	0.9161
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	11.8	0.9090
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	11.9	0.9225
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	12.3	0.9118

Compare expression of checked genes

Lus10015962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.