Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49710 267 / 9e-91 unknown protein AT4G24590 243 / 3e-81 unknown protein AT1G44770 71 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000765 [exp] 436 / 6e-157 AT5G49710 261 / 3e-88 unknown protein Lus10014131 [exp] 58 / 7e-10 AT1G44770 295 / 6e-101 unknown protein Lus10034500 [exp] 57 / 2e-09 AT1G44770 287 / 1e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104200 [exp] 284 / 4e-97 AT5G49710 263 / 8e-89 unknown protein Potri.005G157500 [exp] 273 / 4e-93 AT5G49710 242 / 7e-81 unknown protein Potri.002G084900 [exp] 75 / 7e-16 AT1G44770 234 / 7e-77 unknown protein Potri.005G176500 [exp] 74 / 1e-15 AT1G44770 247 / 5e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015965 pacid=23169808 polypeptide=Lus10015965 locus=Lus10015965.g ID=Lus10015965.BGIv1.0 annot-version=v1.0 ATGGAAATCGAGGTCTCAGCTCCCAACATGTCCAAAGCCTGCGTGATTGACAAGGACAAAGGTGTCGACACATTGAACAAGGATCGCCTTCGCGTTAAGA GGAAGACCTTGCAAGTCGTGTTGGAGCAGTGTCAGAGAGCTCTTGAATCACTCAGCGACGCTGCTGATAATGACGGCGATGATGATTCTGACGATTACAG TCGCCAGAATTCTCCCCGCGATCCAGAAGCTGACGAGTTATGTGACCTTCTCAAGTCCAGAGTTGAATGCCCTGACTTCCTCGAAAAGCTAGAGTCTGCT CAACAGGCTGTTCCAACTGATATGAGCCCTGACCGTGGAGAAGAATGTAGCTCCTGGGACATGGTTAATGAGAATGATCTTTGGGATGGGGAAATGGGTC ATTCAGAAGAAGAAGACTTTGTTCTTGTTCGACAAGAAGATATAGTAGAGGGCATTGCAGGCTTCATGGCTGCTTACCTTTTGTCCCTTAAGCAGACTAA GGACCTGACTCCGAATCAACTTCAAGAAGCACTGTGCAAAACATTCTCAGTGAAAAAGAAAAAAGGAAAGCTTCGAAAGGCTTGGGATGGAAGTAAAGTT ATATACAACGTGGCTTCTTGGGGGGCAACAGCCATCGGGATATACCAGAACCCGGTGATACTGAGGGCAGCCACTAATGCCTTTTGGACCTCCTGTCACA TTATCTCAAAGCTTCTTTGA
AA sequence Show only first row Show all	>Lus10015965 pacid=23169808 polypeptide=Lus10015965 locus=Lus10015965.g ID=Lus10015965.BGIv1.0 annot-version=v1.0 MEIEVSAPNMSKACVIDKDKGVDTLNKDRLRVKRKTLQVVLEQCQRALESLSDAADNDGDDDSDDYSRQNSPRDPEADELCDLLKSRVECPDFLEKLESA QQAVPTDMSPDRGEECSSWDMVNENDLWDGEMGHSEEEDFVLVRQEDIVEGIAGFMAAYLLSLKQTKDLTPNQLQEALCKTFSVKKKKGKLRKAWDGSKV IYNVASWGATAIGIYQNPVILRAATNAFWTSCHIISKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49710			unknown protein		Lus10015965 [exp]	0	1
AT1G44770			unknown protein		Lus10034500 [exp]	1.0	0.9741
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	2.4	0.9628
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	3.5	0.9588
AT2G32210			unknown protein		Lus10003815 [exp]	3.6	0.9538
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	3.7	0.9522
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	3.7	0.9577
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	4.5	0.9552
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	4.5	0.9586
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	6.0	0.9554
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	6.2	0.9493

Compare expression of checked genes

Lus10015965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.