Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53850 223 / 4e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009198 [exp] 345 / 2e-118 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10041928 [exp] 294 / 2e-100 AT5G53850 384 / 5e-131 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10005542 [exp] 286 / 1e-97 AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399000 [exp] 287 / 1e-95 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Potri.011G118132 [exp] 276 / 6e-94 AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015966 pacid=23169791 polypeptide=Lus10015966 locus=Lus10015966.g ID=Lus10015966.BGIv1.0 annot-version=v1.0 ATGGGCCTAGACTGGTCTACACCAAGCCATGGTCCAATCCAGCAGGTCAGAGAAGTTATAAGTGCACCAGTGAAGGCAGGATTGAAGACTTCAGATCATA ATAATGAATCACTGCCTCGCTGCATCCTGCTGGACATTGAAGGGACTACTACACCAATAACCTTTGTTGCTGATGTCCTCTTTCCCTATGCTCGTGACAA TGTTGGAAAACATCTATCAGCAACATATGACACAAAAGATACTCAAGGTGATATAAACTTGTTGCGCTCTCAGGTTGAAGATGATTTGGCACAAGGTGTT AGTGGTGCTGTACCCATCCCACCAGATGATGCTGGAAAAGATGCAGTCATTGCTGCACTGGTTGCAAATGTTGGCACAATGATAAAAGCAGATCGCAAGA TCACTGCCTTGAAACAATTACAAGGGCACATATGGAGAACTGGCTTTCAGAATAATGAGTTGAAAGGAGTAATTTATGATGATGTACCTGCGGCATTGCA GAGCTGGCATGGGTTGGGCATAAAGGTGACTTCATCTACTGATTCTTTTAGTCCCGGTTAG
AA sequence Show only first row Show all	>Lus10015966 pacid=23169791 polypeptide=Lus10015966 locus=Lus10015966.g ID=Lus10015966.BGIv1.0 annot-version=v1.0 MGLDWSTPSHGPIQQVREVISAPVKAGLKTSDHNNESLPRCILLDIEGTTTPITFVADVLFPYARDNVGKHLSATYDTKDTQGDINLLRSQVEDDLAQGV SGAVPIPPDDAGKDAVIAALVANVGTMIKADRKITALKQLQGHIWRTGFQNNELKGVIYDDVPAALQSWHGLGIKVTSSTDSFSPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	0	1
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	1.0	0.9410
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	2.4	0.9282
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	3.5	0.9368
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	4.0	0.9408
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	6.0	0.9202
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	7.4	0.9302
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	11.5	0.9303
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	13.2	0.9250
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	13.4	0.9182
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	13.9	0.9230

Compare expression of checked genes

Lus10015966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.