Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53850 278 / 3e-92 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009198 [exp] 331 / 1e-111 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399000 [exp] 276 / 2e-90 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Potri.011G118066 [exp] 254 / 1e-85 AT5G53850 264 / 8e-88 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00596 [flax] [poplar] Aldolase_II Class II Aldolase and Adducin N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015967 pacid=23169810 polypeptide=Lus10015967 locus=Lus10015967.g ID=Lus10015967.BGIv1.0 annot-version=v1.0 ATGGCGGCGAACGGAGGAGTGGATGTGGCTTCGCAGGCTTATTTGGAGACCGAAGCAGTGAAGGAAACGAGGGCCCTGATTTCTGATCTGTGTCGTCAGT TCTACAGCCTTGGATGGGTGTCCGGTACCGGCGGTAGCATCACCAGCAAGATCCACGATGATCGCGTCCCTAAACCGAATCAGCTCATCCTCATGTCTCC TTCTGGTGTTCAAAAGGAGAGAATGCAACCTGATGATATGTACGTCATGTCAGGAAATGGTTCAATATTGTATGCACCTTCACCCAAGCCTTACCCTCAC AAGCCTCCCAAGTGTTCTGATTGTGCTCCTTTGTTTATGAAGCTCTATTCATACAGAACATGGTACTATTCTATTGTGACTGCAGTGTGCAGTTTCGTCA GCTATTATCACCTTGCATTGTTGTACTGCAGTTGGCCATCTATGCAATTACAGTCTGTGGCTGATACTTCTTTCTATTGCAATTCTCAGGCGTATCAGAT GCGTGATGCAGGAGCTGTTATTCACAGTCATGGGATGGAGTCTTGTCTTGTGACGATGCTCAATCCATCGGCAAAGGAATTTCGGATTACTCATATGGAG ATGATAAAAGGGATAAAGGGTCATGGATACTATGATGAACTTGTTGTTCCAATAATAGAGAATACTGCCTATGAGAATGAGCTGACAGATTCTTTAACTA AAGCTGTAAATACTTTTCCTTCCATCCTCTCCATCCTCTTTGCCCTTGCCAATTGTAAATTGTGCTCTGTTAAGAAGGGATTCTAG
AA sequence Show only first row Show all	>Lus10015967 pacid=23169810 polypeptide=Lus10015967 locus=Lus10015967.g ID=Lus10015967.BGIv1.0 annot-version=v1.0 MAANGGVDVASQAYLETEAVKETRALISDLCRQFYSLGWVSGTGGSITSKIHDDRVPKPNQLILMSPSGVQKERMQPDDMYVMSGNGSILYAPSPKPYPH KPPKCSDCAPLFMKLYSYRTWYYSIVTAVCSFVSYYHLALLYCSWPSMQLQSVADTSFYCNSQAYQMRDAGAVIHSHGMESCLVTMLNPSAKEFRITHME MIKGIKGHGYYDELVVPIIENTAYENELTDSLTKAVNTFPSILSILFALANCKLCSVKKGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	0	1
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	1.0	0.9410
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	2.6	0.8644
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	6.0	0.8580
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	10.0	0.8695
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	15.4	0.8821
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	22.6	0.8505
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	24.0	0.8483
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	24.6	0.8744
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	26.1	0.8730
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	28.6	0.8612

Compare expression of checked genes

Lus10015967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.