Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15150 259 / 4e-87 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METHYL METHANE SULFONATE SENSITIVITY 21, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G141200 [exp] 285 / 2e-97 AT3G15150 295 / 2e-101 HIGH PLOIDY2, A. THALIANA METHYL METHANE SULFONATE SENSITIVITY 21, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF11789 [flax] [poplar] zf-Nse Zinc-finger of the MIZ type in Nse subunit
Representative CDS sequence Show only first row Show all	>Lus10015968 pacid=23169796 polypeptide=Lus10015968 locus=Lus10015968.g ID=Lus10015968.BGIv1.0 annot-version=v1.0 ATGGCATCCGCGTCAAGTTCTGCTGGGCAGGATCTCGTATCCGGAAGAATCAAAAGGCTAGCTGCGGTTATCAGGAACGATAACCAGTCTCTGGTCACCG AGATGAGAAAAGCCTTCACTATGATGAAGGATATTGCAGTTGATTTGGAAAGAGATAATCAATCCACGCAGGTCAAGGAGCTTGAAAGTATAGCAGCAGA GATATCAGAATCATGTGATGACTGCATCCGTCTTACATCAGCAATTGATGTGGTGGGAAATGGATATCAGCCTACTTCAGAGTCTACTGATTTCAAAAGG TTGCTTGATGAGGAGTTTAAGAAACTCAAGGATATGCCTTCACAGAATGACCGTCTGATGCGTCAATTTAGAGAAGCAGTTTGGAAAGTTCATCATGCAG GTCAGCCGATGCCTGGTGAGGAGCAGGAGGATATTGTAATGACAAGCACACAGTCGAACCTCTTGAATGACAAATGCCCATTAACTGGCAAAAAGCTTAC TGACCTAGCAGAACCAGTTCGTAGTGTGGACTGCAAGCATATCTACGAGAAGGAGGCAGTGATGAGATATATAGCCTGTAAAAGCCAAGAAAAATGCTGC GTAGCAGGTTGCCCCAAGTTGCTCCAAGCCCAGAAACTCGTATGCGACCCCTTTCTGCTTGCTGACATTGATGAACTGCGGTCAAGGAACCAAAACGATG GATTGGATGATCTGGTGGAAGATTTCACTGCACTCGATGAACAAGACTAG
AA sequence Show only first row Show all	>Lus10015968 pacid=23169796 polypeptide=Lus10015968 locus=Lus10015968.g ID=Lus10015968.BGIv1.0 annot-version=v1.0 MASASSSAGQDLVSGRIKRLAAVIRNDNQSLVTEMRKAFTMMKDIAVDLERDNQSTQVKELESIAAEISESCDDCIRLTSAIDVVGNGYQPTSESTDFKR LLDEEFKKLKDMPSQNDRLMRQFREAVWKVHHAGQPMPGEEQEDIVMTSTQSNLLNDKCPLTGKKLTDLAEPVRSVDCKHIYEKEAVMRYIACKSQEKCC VAGCPKLLQAQKLVCDPFLLADIDELRSRNQNDGLDDLVEDFTALDEQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	0	1
					Lus10011007 [exp]	1.0	0.9206
AT3G02220			unknown protein		Lus10043249 [exp]	3.0	0.9015
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	3.5	0.8943
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	4.2	0.9184
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	4.2	0.9133
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	5.3	0.9032
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	5.5	0.9103
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	6.8	0.8824
AT5G12230		MED19A	unknown protein		Lus10002150 [exp]	8.2	0.9111
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	9.9	0.8421

Compare expression of checked genes

Lus10015968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.