Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07890 374 / 1e-131 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 353 / 2e-123 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35000 281 / 1e-94 APX3 ascorbate peroxidase 3 (.1) AT4G35970 247 / 3e-81 APX5 ascorbate peroxidase 5 (.1) AT1G77490 186 / 1e-55 TAPX thylakoidal ascorbate peroxidase (.1) AT4G08390 171 / 1e-50 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT4G32320 104 / 7e-26 APX6 ascorbate peroxidase 6 (.1) AT4G09010 70 / 2e-13 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT5G14130 57 / 3e-09 Peroxidase superfamily protein (.1) AT5G42180 57 / 4e-09 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013537 [exp] 440 / 7e-158 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10019906 [exp] 343 / 8e-120 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10014128 [exp] 281 / 9e-95 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 277 / 3e-92 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 242 / 3e-79 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 215 / 1e-68 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 175 / 1e-51 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 160 / 4e-46 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 107 / 6e-27 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015400 [exp] 389 / 1e-137 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.016G084800 [exp] 373 / 2e-131 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 368 / 1e-129 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G112200 [exp] 275 / 4e-92 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 272 / 3e-91 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 271 / 1e-90 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.006G089000 [exp] 184 / 8e-59 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G179200 [exp] 175 / 1e-51 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 174 / 1e-51 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G254500 [exp] 99 / 7e-24 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10015970 pacid=23154450 polypeptide=Lus10015970 locus=Lus10015970.g ID=Lus10015970.BGIv1.0 annot-version=v1.0 ATGGCGAAGAACTATCCTGCCGTCAGCGAGGACTACAAGAAGACGATCGACAAGGCTAAGAGGAAGCTTAGAGGCTTCATCGCTGAGAAGAACTGTGCTC CTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGGACCTTCGATACGAAGACCAAAACTGGTGGCCCTTTCGGTACCATGAGGTACTCGGCCGAGCTGGC CCATGGAGCTAACAATGGACTCGATATTGCCGTGAGACTCCTTGAGCCTATCAAGGAGCAGTTCCCTAACATCTCCTACGCTGATTTCTATCAGCTCGCT GGTGTTGTCGCTGTTGAGATCACTGGTGGACCTGATGTTCCTTTCCACCCTGGTAGAGAGGACAAGCCAGCCCCACCCCCAGAAGGTCGTCTTCCCGATG CCACCAAGGGTGTGGACCACTTGAGGGATGTTTTTGGCACCGGCATGGGTCTTAGCGACCAGGATATTGTTGCTCTCTCTGGTGGTCACACTTTGGGGAG GTGCCACAAAGAGAGGTCTGGCTTTGAAGGCCCCTGGACTACAAACCCTCTGATCTTTGACAACACCTACTTCACTGAACTCCTGACTGGAGAGAAGGAA GGTCTTCTACAGCTACCGAGTGACAAGGCTCTTCTGAATGATCCCGTCTTCCGTCCCCTTGTTGACAAATATGCTGCGGACGAGGATGCTTTCTTTGCTG ACTATGCCGAAGCTCATAGGAAGCTGTCCGAGCTTGGCGGGTGGAGTGTGCCTGTTCCTAGAATTCGTTGGATGACGTTTAAAGCATCGCCTTCAATATC AACGTTGATCATGTGGGGCGTTGAGCCCCATAAGATGGCTTCTCGGAAAGCTAAGGCTTCAAAGGTAAATGCATCATTGATAGCTTGA
AA sequence Show only first row Show all	>Lus10015970 pacid=23154450 polypeptide=Lus10015970 locus=Lus10015970.g ID=Lus10015970.BGIv1.0 annot-version=v1.0 MAKNYPAVSEDYKKTIDKAKRKLRGFIAEKNCAPLMLRLAWHSAGTFDTKTKTGGPFGTMRYSAELAHGANNGLDIAVRLLEPIKEQFPNISYADFYQLA GVVAVEITGGPDVPFHPGREDKPAPPPEGRLPDATKGVDHLRDVFGTGMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTTNPLIFDNTYFTELLTGEKE GLLQLPSDKALLNDPVFRPLVDKYAADEDAFFADYAEAHRKLSELGGWSVPVPRIRWMTFKASPSISTLIMWGVEPHKMASRKAKASKVNASLIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	0	1
AT5G56980			unknown protein		Lus10014282 [exp]	1.0	0.8780
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	3.5	0.8728
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	4.2	0.8502
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	4.5	0.8627
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	4.6	0.8552
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	4.9	0.8668
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	5.7	0.8667
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	6.9	0.8582
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	6.9	0.8252
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	8.3	0.8108

Compare expression of checked genes

Lus10015970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.