Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60040 1738 / 0 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 720 / 0 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT3G57660 434 / 1e-127 NRPA1 nuclear RNA polymerase A1 (.1) AT1G63020 174 / 1e-43 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) ATCG00180 114 / 2e-25 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT2G40030 112 / 2e-24 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) ATCG00170 50 / 1e-05 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013536 [exp] 1289 / 0 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 534 / 3e-162 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10040493 [exp] 401 / 3e-116 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 397 / 8e-115 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10028403 [exp] 275 / 4e-75 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10000051 [exp] 230 / 9e-70 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2) Lus10002955 [exp] 158 / 2e-38 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 157 / 3e-38 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 122 / 1e-27 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341900 [exp] 2036 / 0 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 552 / 3e-169 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 416 / 3e-121 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.003G196900 [exp] 164 / 1e-40 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 162 / 5e-40 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G027232 [exp] 162 / 9e-40 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.013G140850 [exp] 106 / 3e-23 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028000 [exp] 98 / 1e-21 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028101 [exp] 51 / 3e-06 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1) Potri.013G140260 [exp] 52 / 4e-06 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05000 [flax] [poplar] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10015971 pacid=23154398 polypeptide=Lus10015971 locus=Lus10015971.g ID=Lus10015971.BGIv1.0 annot-version=v1.0 ATGCTGGTCCGCGAAGAATCGCATTGTGAACCCTGTGGCGGTAGCTTCAACGACTGCCCTGGCCACTTTGGATATGTGTCACTTGCGCTGCCAGTTTTCA ATATTGGATACCTGAGTTTTGTTCTGGACATTCTGAAGTGCATCTGTAAGAATTGCTCTTTTATACTTCTGGATGAGAAGTTACGTGCCAAGTATTTAAG GCAGATGAGAAGTCCCAGGGTAGATCATTTGAAGAAGACCGCTATTATGAAGGCTGTTGTCAAGAAATGCAGCACCATGGCAAGTGGGAAAGATATAAAA TGCATCAAATGCCATTACTTGAATGGAATGGTGAAAAAGGATAAGGGTTATTTGGTTCATGACCGTTCAAAGTCAGGTTCAATGTCAGGTTCAAAGTCAG GTTCAAAGTCAGGCGATTGCTTTACTGACGAGTGTAGATCTGCCATTTCACACACCAGTGAGTCGAGGCCAACGATTAATCGAGCCACTTACTACCTTAA CCCTGTTGAAGTGTTGTATCTCTTTCAAAGAATTTCAGATGAGGATTGTGAATTGCTTTATCTCGGTGATAGACCTGAAAAGCTAATCATCACCAAGATT GCTGTGCCACCTATTGCTATTCGGCCGTCAGTTATTGTGGATGGGACACAAAGCAATGAAAATGACATTACAGTGAGGATGAAAGATATCATTGTAGCCA GCGCTAATCTTCTGAACGAGCTTCGGGAGGGGAAAATTGCGAAAGACAAACATCTGGACAAGTGGGATCACCTTCAAGCTTTGGTTTCACTCTATCTAAA TAGCGACGCTCGAGTTCCGATGACTCGTGAACTGATGGAGCAACAGAAACAGAGGGCTAACACCTTAAGTGGTCTTACTCAGCGCCTTAAAGGAAAGCAG GGGAGGTTTCGTGGCAATCTGTCAGGGAAGCGTGTTGAATTTACTGGCCGAACTGTTATATCTCCAGACCCTAATCTAAAGATTACTGAGGTAGCAATTC CAATTCATATGGCTCGCATTTTAACTTATCCTGAGCATGTTAACCCTCGCAATATCGAGAAGTTGAAGCAGTGTGTCAGTAATGGCCCACTGAAATACCC TGGTGCAAGGATGGTTAGATATCCAGATGGTTCTCAAAAGACGTTGCAAGGCAATTTCAGAAAACGCGTTGCTGAAGAGCTGAAATTTGGTTGTATAGTA GATCGTCATTTGGAGGATGGTGATGTCGTTCTTTTTAACCGACAACCAAGCTTGCATAGGATGTCTATCATGTCCCATAGGGCCAGAATTATGCCCTGGA GGACATTGAGATTTAACGAATCTGTTTGTAACCCATATAATGCTGATTTTGATGGTGATGAGATGAATATGCATGTCCCACAAACAGAAGAGGCTCGTAC TGAGGCTCTCACACTGATGGGGGTGCAAAACAATTTGTGCACACCAAAAAATGGAGAGATTTTGGTTGCTTCTACACAAGATTTTTTGACGACTTCATTT CTCATTACAAGGAAGGATACCTTCTATGACCGTGCAGCATTCTCACTTATGGCAACCTATATGGGTGATGGAATGGATTCAGTGGATCTCCCCACACCTG CAATTTTGAAGCCAATAGAGCTGTGGACTGGCAAACAACTGTTCAGTATTCTGCTGCGCCCCAATGCAAATGTGAAAGTATACGTGAATCTTACGCTCAA GGAGAAAAGCTATTCCAAGCCCCAGAAAGGGGATAAAAGAGAAAAGGAAACAATGTGCCCAAACGATGGGTTTGTTTATTTTCGGAACAGTGAGTTAATA TCTGGACAACTGGGCAAGGCTACTCTTGGGAATGGAAACAAGGATGGACTTTACTCTGTTCTTCTCCGAGATTACAGTTCTTTTGGCGCTGCTGTTTGCA TGAATCGACTAGCAAAGTTAAGTGCACGATGGATTGGAAATCATGGCTTCTCCATTGGAATTGATGATGTTCAACCAGGAAAACGATTGAGTGACGAGAA GGGAAGAACAATCTCAAATGGTTATCAACATTGCAACAAAATAATAGAGCAATACAATGCTGGAAAGCTTGCACTCAAACCTGGTTGTGATGCAACCCAA ACTTTGGAGGCTGAAGTAACTGACCGATTGAACAAACTTCGAGAAGAAGCTGGAGATGTGTGCATGAAAGAATTGCACTGGCGAAACAGTCCATTGATCA TGTCGCAGTGCGGATCTAAAGGTTCTCCTATCAATATCAGTCAGATGATTGCATGTGTTGGTCAACAATCAGTTGGTGGCCGCCGCGCTCCAGATGGATT CATGAATAGAAGTCTTCCCCATTTTCCTAGGATGTCCAAAACCCCTGCTGCTAAAGGATTTGTCGCTAATTCTTTCTACAGCGGATTGTCTGCGACTGAG TTTTTCTTCCATACAATGGCTGGGAGAGAAGGTCTAGTGGATACGGCGGTGAAAACTGCTGATACAGGATACATGTCTCGAAGGCTGATGAAAGGCTTAG AAGATTTATCTGTTCAATACGATAATACTGTCAGAAGTGCAAATGGGGGTATAGTTCAATTTATCTATGGGGATGATGGTTTAGATCCTGCTCTAATGGA AGCAAAAGGTGGATTTCCATTGAATTTTGAACGATTGCTCATGAAAGTAAAGGCTACATGTCCCGTTGAAGAAGATGAGTATTTATCTCCTTCGGACATG TCGAAGGCCATTGAAGACTTGATGCTGCAAGATCGGACTCTCGACAATCCTTGTGCCGAGGCGTTCAGAAAGAGTCTCAGAAATTTCCTTGCCAAGCATG TTGTGACATTAGAAAGCATGCTAAACAAAGTGAATCACCATGAGGAAGGAAAAACTGATGGTATGGACGCCGAGTTTGCACAAGGAGATAGTAGTGCTAG TTGCAAAGTCATCTACAAAATATACGGTCTTACCAAACAGCAGTTGAAGGTCTTCCTGAGAACCTGCACAGATCGTTACCTTTGGAAGAAGGTGGAACCA GGAACTGCAATTGGAGCAATTGGAGCTCAGAGTATCGGAGAACCTGGGACGCAGATGACGCTGAAAACATTTCACTTTGCTGGAGTTGCAAGCATGAATA TTACTCAGGGAGTTCCTCGTATTAAAGAAATCATAAATGCAGCTAAAAAGATCAGTACACCAATCATAACTGCTGAGCTTGAGAACGCTACCAATGTGAA CGCCGCTCGAATTGTGAAAGGACGTACTCAGAGAACCCTACTAGGCCAGGTTGCAAAGAGCATCCAAATCGTGATGACTTCAAGATCAGCTTCGGTAGTG GTTACTCTTGACATGGAAATAATTCAAGAGGCACAACTCGCTGTGGATATTAACGTTGTATATGAGGCAATTGTTGGGATTCCAAGATCTAAAGTGAAGT CACAGCATGTAAAGGTTCTAGATGACAGAAAGTTGGAGGTAACCCCGCCGGGCGACAGAGATAAACTTCAGTTTGAACTCCATAACATCAAAAATATGCT CCCAAATGTTGTAGTGAAGGGTATTCATACAGTGGAACGGGCAATTATTGCTCAGAAAAAGAATGATGGCAGTGTCAAAGATGGAGCCCCCCCAAGATTT TTGGGTAGAAAATATTTATTTGTAATTTTCATGGGGCTCTTACAAGTGATGGGAATAGAAGGTATAGACGGGCCCAACACGACGAGCAACCACGTTATGG AAGTGCTGCAAGTGCTGGGAATTGAAGCTGCAAGGAGTTGCATAATCGAGCAGATACAAGACACGATGGAAAGCCACGGGATGGCCATTGACATGCGGCA TATGATGCTCTTAGGAGACTTAATGACATTCAAGGGAGAGGTGCTTGGAATAACAAGGTTCGGTATCCAGAAGATGGACAAAAGCGTGCTGATGTTGGCC TCGTTCGAGAGAACCACTGATCACCTGTACAGCGCTTGCATAAATCGGAGGGAAGACAAGATTGAGGGCGTCAGCGAGTGCGTCATAATGGGGATCCCTG TCCCTCTAGGAACTGGGATGCTCAAAATCCTCCAAAAGGTCGATAATCCGCCAGCCTTGTTGCAATATGGACCTGATCCCATTGTGGCTAACGGTTGTAC TAGCAGCAGCAGCAGTTCTGTGCTATGA
AA sequence Show only first row Show all	>Lus10015971 pacid=23154398 polypeptide=Lus10015971 locus=Lus10015971.g ID=Lus10015971.BGIv1.0 annot-version=v1.0 MLVREESHCEPCGGSFNDCPGHFGYVSLALPVFNIGYLSFVLDILKCICKNCSFILLDEKLRAKYLRQMRSPRVDHLKKTAIMKAVVKKCSTMASGKDIK CIKCHYLNGMVKKDKGYLVHDRSKSGSMSGSKSGSKSGDCFTDECRSAISHTSESRPTINRATYYLNPVEVLYLFQRISDEDCELLYLGDRPEKLIITKI AVPPIAIRPSVIVDGTQSNENDITVRMKDIIVASANLLNELREGKIAKDKHLDKWDHLQALVSLYLNSDARVPMTRELMEQQKQRANTLSGLTQRLKGKQ GRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPEHVNPRNIEKLKQCVSNGPLKYPGARMVRYPDGSQKTLQGNFRKRVAEELKFGCIV DRHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTTSF LITRKDTFYDRAAFSLMATYMGDGMDSVDLPTPAILKPIELWTGKQLFSILLRPNANVKVYVNLTLKEKSYSKPQKGDKREKETMCPNDGFVYFRNSELI SGQLGKATLGNGNKDGLYSVLLRDYSSFGAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGKRLSDEKGRTISNGYQHCNKIIEQYNAGKLALKPGCDATQ TLEAEVTDRLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFMNRSLPHFPRMSKTPAAKGFVANSFYSGLSATE FFFHTMAGREGLVDTAVKTADTGYMSRRLMKGLEDLSVQYDNTVRSANGGIVQFIYGDDGLDPALMEAKGGFPLNFERLLMKVKATCPVEEDEYLSPSDM SKAIEDLMLQDRTLDNPCAEAFRKSLRNFLAKHVVTLESMLNKVNHHEEGKTDGMDAEFAQGDSSASCKVIYKIYGLTKQQLKVFLRTCTDRYLWKKVEP GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKKISTPIITAELENATNVNAARIVKGRTQRTLLGQVAKSIQIVMTSRSASVV VTLDMEIIQEAQLAVDINVVYEAIVGIPRSKVKSQHVKVLDDRKLEVTPPGDRDKLQFELHNIKNMLPNVVVKGIHTVERAIIAQKKNDGSVKDGAPPRF LGRKYLFVIFMGLLQVMGIEGIDGPNTTSNHVMEVLQVLGIEAARSCIIEQIQDTMESHGMAIDMRHMMLLGDLMTFKGEVLGITRFGIQKMDKSVLMLA SFERTTDHLYSACINRREDKIEGVSECVIMGIPVPLGTGMLKILQKVDNPPALLQYGPDPIVANGCTSSSSSSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	0	1
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	1.4	0.9431
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	3.2	0.9082
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10020393 [exp]	3.5	0.9062
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	4.9	0.9257
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	7.5	0.9028
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	8.9	0.8939
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	10.2	0.9084
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	10.5	0.8583
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	11.5	0.8973
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	12.0	0.9108

Compare expression of checked genes

Lus10015971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.