Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06610 403 / 7e-140 Protein of unknown function (DUF620) (.1) AT3G19540 297 / 9e-97 Protein of unknown function (DUF620) (.1) AT1G49840 291 / 5e-94 Protein of unknown function (DUF620) (.1) AT1G27690 288 / 6e-94 Protein of unknown function (DUF620) (.1) AT1G79420 280 / 6e-91 Protein of unknown function (DUF620) (.1) AT5G05840 235 / 3e-73 Protein of unknown function (DUF620) (.1) AT5G66740 208 / 1e-63 Protein of unknown function (DUF620) (.1) AT1G75160 192 / 5e-57 Protein of unknown function (DUF620) (.1) AT3G55720 192 / 1e-56 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013534 [exp] 635 / 0 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 305 / 5e-100 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 303 / 7e-99 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 251 / 5e-82 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 255 / 1e-80 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 253 / 6e-80 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 253 / 9e-80 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 251 / 4e-79 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 245 / 2e-76 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062400 [exp] 486 / 2e-172 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 473 / 2e-167 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 302 / 8e-99 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 293 / 2e-96 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 294 / 2e-95 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 288 / 3e-94 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 288 / 2e-93 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 253 / 3e-80 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 251 / 3e-79 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 221 / 2e-68 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10015972 pacid=23154372 polypeptide=Lus10015972 locus=Lus10015972.g ID=Lus10015972.BGIv1.0 annot-version=v1.0 ATGAACCGTCTAGCGCCGGTATCGGAGGAGCCAGTAACCAGCGAGGAAGACAACATCAACAACCGAAGCCGGCGAAGAACCGCGGGCGGGGGCGCAGGCG CCAACAACAACATCCATTTCACGTCGAAGAGCACTAGATCAGGTCGACAATCGTGGAAATACTGGCTCAAATCTCACCTGGTCTCGCTGCCGCTTCGACT GTTCCACAAGAAGTCGTCGTCGTCGCTGTCGGAGCTCAGGACTCTCCTCAGCGTCATCGGCTGCCCTCTCTTCCCTGCCTCCATTCACCCCAAGCTCTCC TCCTTCAACCAGGTGTCTTCATCGGCGCAGTACATAATCCAGCACTTCACGGCGGCGACAGGCTGCCGGAAGCTGGAAGGCAGGGTGAAGAACGTATTCG CGACTGGGAAAGTGACAATGAGGATGTCGACAGACCACGACCATCTTGCTCTGCCCGGCGGCGGATCATCAATGGCTGAAAAGGGTTGCTTCGTGATGTG GCAGATGGTTCCTAACAAGTGGCTGATCGAGCTGGTTCTGGGCGGGCACAAGGTTGTAGCGGGGAGCGATGGCAACGTGGCTTGGCGCCACACGCCGTGG CTAGGCGCTCACATCGCGAAAGGCGGCCTCCGCCCTCTCCGTCGAGCCATCCAGGCAAGTATAGGGTTGGATCCTGTAGCAATAGCAGCGGTGTTCTCCC CAGCACAGTACATGGGCGAGAAGTGCATCAATGGAGAAGACTGTTTCGTCCTGAAGCTAGCTGCCGACCAAGGAGAGCTCTCCGACCGGAGCGACAGTAC GGCCGAGATGATCAAGCATGTGACATTCGGCTACTTCAGCCAGAGGAGCGGCCTCCTGGTCTACCTAGAAGACTCCTATCTAACAAGGATCCAGTCCCCC GGGACCTACCCGACCTATTGGGAGACCACGATGGCCACCCATATCGAGGATTACCGCCATGTCGAAGACGGGGCAATGATCGCTCACGGCGGCCGGTCGA CCGCAGTGATCAACAGATTCGGGGACAACCTCAAGGCGGGGTTGTCGTCCGTGATGACTAGGATGGAGGAGGAATGGTCGATTGACGACGTGGCGTTTGA CGTGGCAGGGCTGTCGTGTGACTGTTTCATTGCTCCCCTGGACGTTCTTCAGAGAAGGGATGATGATGTCCAGCTGGACTTGAGACCGTCTCAGCCTTGG AAAGGTGATTTGTAA
AA sequence Show only first row Show all	>Lus10015972 pacid=23154372 polypeptide=Lus10015972 locus=Lus10015972.g ID=Lus10015972.BGIv1.0 annot-version=v1.0 MNRLAPVSEEPVTSEEDNINNRSRRRTAGGGAGANNNIHFTSKSTRSGRQSWKYWLKSHLVSLPLRLFHKKSSSSLSELRTLLSVIGCPLFPASIHPKLS SFNQVSSSAQYIIQHFTAATGCRKLEGRVKNVFATGKVTMRMSTDHDHLALPGGGSSMAEKGCFVMWQMVPNKWLIELVLGGHKVVAGSDGNVAWRHTPW LGAHIAKGGLRPLRRAIQASIGLDPVAIAAVFSPAQYMGEKCINGEDCFVLKLAADQGELSDRSDSTAEMIKHVTFGYFSQRSGLLVYLEDSYLTRIQSP GTYPTYWETTMATHIEDYRHVEDGAMIAHGGRSTAVINRFGDNLKAGLSSVMTRMEEEWSIDDVAFDVAGLSCDCFIAPLDVLQRRDDDVQLDLRPSQPW KGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	1.0	0.9180
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	2.2	0.9121
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	4.2	0.9048
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035897 [exp]	6.0	0.9179
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	7.7	0.8878
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	10.6	0.8917
AT2G33850			unknown protein		Lus10018650 [exp]	11.5	0.8983
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	12.4	0.8793
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	13.2	0.8804
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	13.5	0.8946

Compare expression of checked genes

Lus10015972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.