Plant FIBer expression Database

Lus10015973 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15351 184 / 3e-60 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000852
[exp]
179 / 1e-55 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G142100
[exp]
203 / 1e-67 AT3G15351 187 / 1e-61 unknown protein
Potri.002G142000
[exp]
203 / 1e-67 AT3G15351 189 / 4e-62 unknown protein
Potri.014G057550
[exp]
78 / 1e-18 AT3G15351 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence
>Lus10015973 pacid=23154384 polypeptide=Lus10015973 locus=Lus10015973.g ID=Lus10015973.BGIv1.0 annot-version=v1.0
ATGGATGAGAATATGAAGCTGTTCCAAGAAAGATTGCTCGAGCTTGAAACTGAAGGAGAGCAGTTGCTTCTAGCAAGACATCAGACGGTGGAAAATGACA
GGCTAAGGAATGGGAACAGGGAAGCGCTTACAGCACTAAGGAAGAGAGCTAGAACAACCAAAACTAGTGTCGCATCTCCTTTCGAGTCGATAATGAAGGA
TTTCGGACGGTCTGGATCAATCCCCTTGGTGAAGGAGGTCTGCACAACTTGTGGCGACCACGACTCGGAAGAGCCGACATGGATGATGTTCCCAGGAGCC
GATGTTTTCGCTAGCGTTCCTTTTCACGCTGCTCATACCATTTTGGAGACAGATCAGAAAAGACTCGACTACGAGGCCAACAAGTTGCAAAGTTATGTGA
AGGAGAAGTCCCTTTCGATTTCTGAGCTAGGTGCTCTGTCTGATAAGATTAGCCCTAGTGTGCTTAGATCTCTGGTAGCTTTAACAGACAAGCGGAAGTG
A
AA sequence
>Lus10015973 pacid=23154384 polypeptide=Lus10015973 locus=Lus10015973.g ID=Lus10015973.BGIv1.0 annot-version=v1.0
MDENMKLFQERLLELETEGEQLLLARHQTVENDRLRNGNREALTALRKRARTTKTSVASPFESIMKDFGRSGSIPLVKEVCTTCGDHDSEEPTWMMFPGA
DVFASVPFHAAHTILETDQKRLDYEANKLQSYVKEKSLSISELGALSDKISPSVLRSLVALTDKRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15351 unknown protein Lus10015973
[exp]
0 1
Lus10036954
[exp]
7.3 0.8162
AT3G47300 SELT SELT-like protein precursor (.... Lus10001253
[exp]
8.6 0.8366
AT5G57440 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Halo... Lus10006954
[exp]
12.4 0.8041
AT2G25430 epsin N-terminal homology (ENT... Lus10001502
[exp]
15.7 0.8208
AT2G33040 ATP3 gamma subunit of Mt ATP syntha... Lus10007534
[exp]
25.3 0.8154
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Lus10041824
[exp]
28.0 0.7852
AT5G47660 Trihelix Homeodomain-like superfamily p... Lus10039080
[exp]
30.0 0.7916
AT5G08530 CI51 51 kDa subunit of complex I (.... Lus10036999
[exp]
33.4 0.8065
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Lus10024267
[exp]
36.0 0.8048
AT1G48420 DCD, ATACD1, AC... A. THALIANA 1-AMINOCYCLOPROPAN... Lus10031898
[exp]
41.1 0.7689

Lus10015973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.