Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 718 / 0 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G56700 382 / 1e-126 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT5G22500 352 / 3e-115 FAR1 fatty acid reductase 1 (.1) AT3G44550 345 / 2e-112 FAR5 fatty acid reductase 5 (.1) AT3G44540 342 / 2e-111 FAR4 fatty acid reductase 4 (.1.2) AT4G33790 341 / 5e-111 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G44560 332 / 2e-107 FAR8 fatty acid reductase 8 (.1) AT5G22420 247 / 6e-76 FAR7 fatty acid reductase 7 (.1) AT3G60060 44 / 7e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029336 [exp] 887 / 0 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 883 / 0 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 410 / 1e-136 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 354 / 4e-116 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 354 / 6e-116 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 291 / 1e-91 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 286 / 2e-89 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 278 / 2e-88 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 81 / 3e-17 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062200 [exp] 816 / 0 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 764 / 0 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 514 / 3e-178 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 356 / 8e-117 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 355 / 2e-116 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 354 / 3e-116 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 348 / 1e-113 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.009G145000 [exp] 344 / 2e-112 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145100 [exp] 61 / 2e-11 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10015974 pacid=23154413 polypeptide=Lus10015974 locus=Lus10015974.g ID=Lus10015974.BGIv1.0 annot-version=v1.0 ATGGGGGCTTTCTCCCTCTATTCTCTTCCACCTCCTTCAATTTTCATACGAACAAATAAAGCTGTGAAGATATCTGCTCGTGGTCATCGTTGGTCAAGGA GGAGGAGAAGTTGTGCTACTACTGTAGTGCTCTGTCAAGATGGAGGGAAGGATGCTAGCAGCTTGGTTTTGGCTCCAAATGGAAATAGAAAGCCTGAGAT GGATGTGAAGGATTTAGTGTCTTTTGGACCGACAAGTTCCGGTCCTGTGGAGACCCATGAAGGTATTGGTATTGCGAGGTTCTTGAGAGGGAAAAGGTTC TTCATTACTGGTGCAACCGGGTTCCTTGCAAAAGTGTTGATTGAAAAGATACTAAGAACAACGCCTGATGTGGGAAAGATCTATCTGTTGATTAAGGCAG AAAATAAGGACGCTGCGATGGCAAGATTGAAAAGTGAGATATTAAATGCAGAACTGTTCAAGTTCCTCCGGCTTACCTATGGAAAATCATACGAGACTAT CATGTTGAGCAAATTAGTTCCGGTGGTTGGGAATGTCTGCGAATCTGGTCTTGGGTTGGAACAAGAATTGGCAGATTTGATCGCTGATGATGTTGATGTG ATTGTGAATTCAGCGGCCAATACAACCTTTGATGAAAGATATGACGTGGCCATCGACATTAACACACGCGGACCTTCCAACCTAATGGCTTTCGCTAAGA GGTGCCGGAAACTAAAACTCTTCTTGCAAGTATCAACAGCATATGTGAATGGACAAAGACAAGGAAGAATCATGGAGAGGGCATTCGCTGTAGGAGATTG CATAGCTAGGGAGAACAACAGTAATCTTTCCCGTGAAGCTACATCAAGATTCACATTGGACATTGACGACGAAGTGAGGCTTGTGCAGGACTCCAAGGAG GCGTTTCACCGAGACGAAATGGACAATAAGATGAAAGAGCTCGGATTGGAAAGGGCAAAGAAATTTGGATGGCAAGATACCTATGTCTTCACAAAAGCCA TGGGAGAAATGGTTATTGATAACATGAGAGGCGAGATCCCCGTCGTCATTCTTAGACCGAGTGTAATTGAGAGCACCTACAAGGAGCCATTCCCTGGATG GATGGAAGGTAACAGGATGATGGACCCTATAGTTCTATGCTATGGGAAAGGGCAGCTTACAGGATTTCTTGTGGATCCAAATGGAGTTCTTGACGTGGTC CCGGCAGATATGGTGGTGAATGCGACACTAGCAGCAATAGCGAGGCACGGAATGGAGCAGAAACCCGAGATTAACGTCTATCAAATCGCCTCTTCGGTAG TAAATCCACTGATCTTCGATGACTTGGCAAAACTGCTCTACGAACACTACAACTCCTCTCCATACATGGACTCAAACGGCAGGCCAATCACTGTCCTGCT GATGAAACTCTTCAACAACATGGATGATTTCTCTGATCATCTTTGGGGAGAAGTGATTCAGAGAAATGGGTTGACAGCAATCACCTCATCTGATGATGGG AAATTGTCTCAGAAACAAGAATTCATATGTCGGAAATCGGTGGAACAGGCCAAGTACCTAGCGAATATCTATGAGCCATACACATTCTACAGCGGAAGAT TCGACAACAGCAACGGGGAGAGGCTGATGGAGGTAATGTCGGAGGACGAGAAGATGAAATTCGGATTCGATGTTGGGAGCATAGATTGGAGAGAATACAT CACTAATGTTCATATCCCTGGCTTAAGAAGGCATGTCATGAAAGGAAGAGGTACCAGCAGCTAA
AA sequence Show only first row Show all	>Lus10015974 pacid=23154413 polypeptide=Lus10015974 locus=Lus10015974.g ID=Lus10015974.BGIv1.0 annot-version=v1.0 MGAFSLYSLPPPSIFIRTNKAVKISARGHRWSRRRRSCATTVVLCQDGGKDASSLVLAPNGNRKPEMDVKDLVSFGPTSSGPVETHEGIGIARFLRGKRF FITGATGFLAKVLIEKILRTTPDVGKIYLLIKAENKDAAMARLKSEILNAELFKFLRLTYGKSYETIMLSKLVPVVGNVCESGLGLEQELADLIADDVDV IVNSAANTTFDERYDVAIDINTRGPSNLMAFAKRCRKLKLFLQVSTAYVNGQRQGRIMERAFAVGDCIARENNSNLSREATSRFTLDIDDEVRLVQDSKE AFHRDEMDNKMKELGLERAKKFGWQDTYVFTKAMGEMVIDNMRGEIPVVILRPSVIESTYKEPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPNGVLDVV PADMVVNATLAAIARHGMEQKPEINVYQIASSVVNPLIFDDLAKLLYEHYNSSPYMDSNGRPITVLLMKLFNNMDDFSDHLWGEVIQRNGLTAITSSDDG KLSQKQEFICRKSVEQAKYLANIYEPYTFYSGRFDNSNGERLMEVMSEDEKMKFGFDVGSIDWREYITNVHIPGLRRHVMKGRGTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10015974 [exp]	0	1
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	9.4	0.6551
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	28.2	0.6264
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	42.0	0.6339
					Lus10012862 [exp]	56.9	0.6268
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	57.3	0.6125
					Lus10007709 [exp]	90.1	0.5426
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	92.6	0.5963
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	93.5	0.5890
AT4G37280			MRG family protein (.1)		Lus10019311 [exp]	132.1	0.5635
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	197.1	0.5558

Compare expression of checked genes

Lus10015974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.